GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-20 00:16:16, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:14665645-14665663
GAGAAAGAGGGGACTGGATTCTTTATAAAA14665645TAAGAAAAGGAAATAACACAGAAAGAAAGAACATAAAAACAGGCGTTCA
chr1:15380882-15380900
CCAATCAGAAGTAGAAAATGACTGTGATGA15380882AAAGAATGTGCATTAACACTTTGAGAGGCCAAGGCGGGTGGATCACTTG
chr1:19942739-19942757
CACTTTCCATTGAATTTTTTATTTGAATCA19942739TAGGAATAGGCAGCAACACAATAGCTATAATGATGTATAAATAGGATAT
chr1:29364735-29364753
GGGTACATTTTACACCCAATTAAAGAATCT29364735TAATTATTGGCATTAACACATTTATTTATGCTTTCATCATCTCTCCTTC
chr1:35287272-35287290
GACATCACTGATAAATGCTATCAAATATGT35287272AAAGAAAAAGCATTAACACTTCTACACAAACTCTTCCAGAAAACAGAAA
chr1:47960740-47960758
GATGAATTTCCACCAGACAGGGAGTTCTTT47960740TCAGAATAGGCACCAACACTGGGCACAAGGTCTAGCTAGCACTCAATAG
chr1:55334327-55334345
GCCATTCTAATTGGGATTCTTTAATTCTAA55334327TAAGAATGGACATTAACAGTGATGGTTATGAAGGCAATGTAATAGTTCT
chr1:60294345-60294363
TGCTATATAAGTAATATTCAGTATTGTTAT60294345TAAGGATAGGCTTTAAGACATAAAGTAACTTTCTCTGTTGGCTCTATTT
chr1:61335627-61335645
ATTATAAATATATGTAAGTATATTAATTTC61335627TAAGAATATGCATTAACTTACAAGATTTCTGTACACTCCAACATTATTT
chr1:64175974-64175992
TCAAAATATAGAAACAAAAACGGTTTGATC64175974TATGAAGAGGCATTAACAAATCCTTCACTATTTTAATACAGCTTTCTTG
chr1:70493049-70493067
TCTCATATTTTCTCCCTCTAAATTTAATGC70493049TAAGAATAGTCATTAACATGTGTTCCCAAAAGTTATATTGATAACCTAA
chr1:75377599-75377617
CTCCTAACACCTTAGCCAGATGTGATGGAA75377599TTAGACAAGGCATTAACACAGAGAAAAGATAAAAAGATGGAATTTTTTG
chr1:84891115-84891133
GCCAGTTTCTAAACTGAAAAACAAGAATGT84891115TAATAATAGGCATTAAGGCAATCTATGTAAAACAGTTCAGTGCCTAGCA
chr1:85531036-85531054
AGGGGGACTCTCTAAAATAAAATGTTTATT85531036TGAGAATAGGCATTAACAATGGGAAGATGCATGCGGTAGTAAACTATAT
chr1:86278909-86278927
CTGTAGTATATTTTTGGGACAGCATACAGA86278909TAAGAATATACATTAAAACATATAAAATAGTGGCTATTTTAGGGGGAGG
chr1:119892254-119892272
AATGATTCCCAAATCAGTCAGCCTCCTGAG119892254TCAGAATAGGCTTTAAGACTCCAGCACAGCACATGGTGGAAGAAGATTT
chr1:142704662-142704680
CTTCTCATTCAATTCGATTGGGCCTTGACA142704662TAAGAATAGACATAAACAAGCTAAGAATTGACAATCTAAAAATAAGCCT
chr1:147095640-147095658
AAGTTGATTCCTTTGATATCTTTATTTTTC147095640TAGGAATGGGCATTAATACACAGAATCCTCGAATTTCAGGTCCAAACCC
chr1:182641260-182641278
TCTGCACCCAGAGGCTGTGCGGGGGGCAGC182641260AAAGAATAGGTATTAACTCTTTCCAGTCACCAGTGAGCTAAAAATCAAG
chr1:186020117-186020135
ATATGAGACACGTTTAACTGAGCCCTTAAG186020117GATGAATAGGCATTAACTCTGTGAAGAGGGTAAAAGCAATGCAAAGCCC
chr1:187685460-187685478
GGAATGAATTAAAAGATTGATAGAGCTTCA187685460TTTGAATAGGCAGTAACACAAGCTGGAAAACTGCTGACACTAAAAAAAA
chr1:189759133-189759151
GATGTATGAGCATATTTGCAAACAATCACA189759133AAAAAATAGGCATTGACACTTGCAGACTAAAGGCTAAAGATGAAACAGT
chr1:191049494-191049512
GTCCGTGTATCTGTGATTAGCAACAAATGA191049494GAAGAAAAGGCATTAACAACAGAAAGAGTAGCAAAAAAACAAAACAAAA
chr1:192819971-192819989
GAGAGAAAATAGGGTCTGTAACTCAAATGC192819971AGAGAATAGCCATTAACACAAGAGGAACACTGCCTCTGTATTGTAAGGC
chr1:197608055-197608073
CAATTCATTAAACTCAAACATGCAAAAATA197608055TAATAATAGGTACTAACACAATACCACACTTTAAAATATAGGGAGAAAA
chr1:204378001-204378019
GCTGACCACTGATAACTAGCATTGCATTCC204378001TAAGAAAAGGCAATACCACTTCCTGTACTGGCTTTGACTTTCAATTAAA
chr1:205131888-205131906
GAGTTCAAGGGAACAATGTTAATAATTATT205131888TAAGAATAGGCATAAACCAGAATTCTCCCAGGCAGGCAAACCAGAACAA
chr1:214427421-214427439
GAGTTTAACTACCACATAAAATATCCTCAA214427421GAAGAATTGGCATTAAAACAAAAAGTTATTGTGTACATGGAAAGACAAC
chr2:6156829-6156847
TTAGATATTTATTAGCGTTCTCCTTCACTT6156829TAAACATAGGCATTAACATGTACATTTTTTTCTCTCAGTTCTACTATAG
chr2:14867802-14867820
TTTTTTTAATTGTTCCAAGTTCAAACAATG14867802GAAGAATATGTATTAACACCTGTTAGAAATATGTACATCTTTTCTTCCT
chr2:20484643-20484661
GTTGTTTTTAGTAAATACAGTAATTCTGAT20484643CAAGAATAAGCATTAGCACGCTGCTAATAAAATATCCACATTACTAGTA
chr2:39588748-39588766
ATTAGAATATGTCAAATTAAATTGTGTACC39588748TAAGAATAAGCTTTAAAACCCATAGGCTCCATACAAAGTTTAAACTTGC
chr2:42662118-42662136
CAAAAATTAACTAAAAATGGATCAGAGACC42662118TAAAGACAGGCATTAACACTATAAAACTCTTAAGAGAAAACAGGGCTGG
chr2:44554628-44554646
GTGAAGGAAAAATTTGAGTTTCCAGAGGGC44554628AAAGAAAAGGCATTAAGACACAGATACGACACAGCATGTATAAGGGCAA
chr2:50937770-50937788
TAAACATACTTTTCCCATCTTTGAATAAGT50937770TAAGAATAAGCATTAAAAAGTGTCAAAAATAAATGAACTCGACATTTAG
chr2:54658883-54658901
ATGGAATATTTGGGGAGCTTGGAGCAAGAG54658883TACAAATAGGCTTTAACACTTGGGGAGCTTGGGGCAAGAGTACAAATAG
chr2:62110827-62110845
ATTCTCTTCCCTTACATTAGCATAATAGTT62110827TAAGAATACGCAATAACAGTCCAACTTTACAAAAGAAAAAAGTGGCTTT
chr2:71613590-71613608
ATGCATTCCCATTAAGGTTGGGAACTAAAC71613590TGAGAATATGCATCAACACCTCTTTCAGTTAAAATAAATATTTTTTAAA
chr2:81633802-81633820
CTCCCTAATAAATTATTCAAATACTTACCA81633802TAATAATAGGAATTAAAACTTGTTTCTGCTATTTTGCCAGAGATATGTA
chr2:108724279-108724297
CTTCACTCTCCAATCCTATCTAATGAAATA108724279TTATAGTAGGCATTAACACCTGCTGCAAATTGATTAGGTTCTTCAACAT
chr2:110694112-110694130
ATGCATTCTCCCCACTGGCAGATATGCAAC110694112CAGGAACAGGCATTAACACGCTTTATTCCCAGAGTTTTAATATTTTCCA
chr2:110992057-110992075
ATGCATTCTCCCCACTGGCAGATATGCAAC110992057CAGGAACAGGCATTAACACGCTTTATTCCCAGAGTTTTAATATTTTCCA
chr2:111542081-111542099
GCCTCCATGCGGATGCAGTTGACTATTGTA111542081TAAGAAGAGTCTTTAACACTAACAAGGTTAGAGACCAGAAAGCCACATT
chr2:112729010-112729028
GGTTATTGATTGTGTTCTTTTATATATAAA112729010AAAAAATAGGCATTTACACTCTACATTTCCCTGTAAGCACTGCTTTAGC
chr2:117408450-117408468
GATTTAACTCTACACAACACACATTTATAA117408450GAAGAATAGGCACTAATACTCTTTTCATAGAACCTAGAGGAGATTAAAA
chr2:117465359-117465377
TCACCCTCTAAGGTTTCTTGAAAATGAACG117465359TCACAATAGGCATTAAGACAAGACATACAGATCTACTTAACATGCATAG
chr2:118485046-118485064
TCCTAAAATGCAAACACACCTGAGAAAGGT118485046AAAGATTAGTCATTAACACCATAGCAGGAAACTTTAGCACTAACACCTT
chr2:118815148-118815166
TAGGGCAACTCTCTTGAAAATTCTTGTTAG118815148AAAGAATACCCATTAACACATTAATCTGAAAGATCAAATTAATTTGTCA
chr2:119013613-119013631
TCTGTCAAGAATCCATCAATTAAGGGCTGC119013613TAATAATATGCATTGACACAGCAGATTAGGCAGCCGTGGTCCTGTTGGC
chr2:129777320-129777338
AAGAAAAGACTTCTTGCAAGGGCCCTAGAG129777320TAAGAGGATGCATTAACACACACACAATTGGTGATGTGATGCGGATGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/GTGTTAATGCCTATTCTTA
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : GTGTTAATGCCTATTCTTA | format : html | download : | debug : 

0.011 | 0.011 | search_start;
7.015 | 7.004 | search_minus_done; http://172.18.8.78:28018/match?q=TAAGAATAGGCATTAACAC&k=3&no_gap=1&offset=0&limit=50
7.027 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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