GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-17 19:04:01, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:7787094-7787112
CCTCAAAGCTCACCCTGTTGTCTTTGTTTG7787094AAGCATCATGGGTAAGAACTAGGACCAAACTCATCAGCTCCCTAAATCT
chr1:10230916-10230934
TGAATTTGGAGTGATACTTTTTTTAATTAA10230916AAGCATAAATGTAAAGAAAAGTTTGGCTTCTTTTGGTATTTATAAATAA
chr1:11274711-11274729
TAGTATTTTTATTTAAAAAGGTATCTTTAA11274711AAGCATAATGGTTTAGAAAGCAAAAACTATACTAGAAGATGCTGGTAAA
chr1:15784937-15784955
GTTACATGTTTAATCAAATTTCATTATTAC15784937AAGCATAATTGATATAAACTGCTTTGGGAGCAAACCCAGCTGAATCAGG
chr1:16731003-16731021
ACAAAAAAACAAAACCAAAAAAAGGAAAAA16731003AAGAAAAATTGTTAAGAATTTCTATGATGTTGGGTGCGGTGGCTCACGC
chr1:18225923-18225941
CCAACATCATACTGAATGGGTAAAAGCTGG18225923AAGCATTCTTCTTAAGAACTGGAACAAGAGAAGTATGTCCACTCTCACC
chr1:21122159-21122177
AATTTTCAACCATCCAAACTTTGGAATTAG21122159TAGCATAATTCTTGAGAACCATGTATATCAAGACCCAGGATTGTTCAAC
chr1:25475378-25475396
CTCAACAGTGCCCTCTCTTGGCACAACCAA25475378GAGCATAACTGTTAAGGACAAAGACTGTAGAGCAGAGCAATGTGAGTTT
chr1:28386710-28386728
TATAAATTTCATCTCTGATAGGAGGAAGGT28386710AAGAATAATTGTTAAAAAATATTTATGTGTATACACACTCAATAATGTG
chr1:32273225-32273243
AAAGGAAAAAAGGCAGAAAACTAATGAACT32273225AAGCATAATTTTTAAGACTTTATAAATAGTAGCATAAACTGAACGGAAG
chr1:35663577-35663595
TAAACATTTGTTGAGTGAATGAATAAATAA35663577AAGCATAATGGTGAAGAACAGGCTGTTTCCATCTGAGCAGGGTATTGTT
chr1:35665444-35665462
TAAACATTTGTTGAGTGAATGAATAAATAA35665444AAGCATAATGGTGAAGAACAGGCTGTTTCCATCTGAGCAGGGTATTGTC
chr1:54511929-54511947
TAATATATTTTAATGATTTATACAAATATA54511929AGGTATTATTGTTAAGAACCAGATCACTCAGTTAAGAAGTAAGGGTATG
chr1:58223845-58223863
GTAAAGGGTCTGGCACCCAATAAGGGCTCA58223845AATCATTATAGTTAAGAACTACTAGGCACTAGGTACTTTTAATACATCT
chr1:62782747-62782765
AAAGGCAACGCGTGGCCCAGGAACCACTTG62782747AAGCATAATTGTGCTGAACATATTGAAGGTGCTCATTGCAAGGGGCCGG
chr1:68730878-68730896
ACAACTGGATTTATATGCTGGATTTATACC68730878CAGCATAATTGTTAATAATGCCCCTTTCAGGCTCAGAAGTGTTTCAGAC
chr1:69499038-69499056
ATGAATTTTGGGTAACAAGCTGAAAAGTAT69499038AAGCACAATTGTTAAAAATTCAATGTGATATTCTTTTCAAGAAAATTCA
chr1:69605147-69605165
TAACACAGTAGCATCTGCAATATTGTGGCA69605147TAGCATAATAGTTAAGAGCACAGGCTATTTTGGGGAAAATATGAATTCA
chr1:70626527-70626545
CATGTGCATTTACTGTCTTTTTCATTAAAA70626527AAACATAATTTTTAAAAACATCAAAATTTCAAATTGAAAGGGCCATGTA
chr1:72731363-72731381
GTTTCTTAAATCTCTAAGGCATGCACTATT72731363AAGCATACCTGCTAAGAACTTAAAAGATATTTGAAAAATCTTCAATGAG
chr1:79100593-79100611
TAACCAGTTACAAATATGTTTATTTTTTGT79100593AAGCATCATGGTTAAGCACAAAACAAATACTGATAGTAGATACACAAAA
chr1:80073500-80073518
ATGACTAACTCTGTTTTTCCTAAGAAATTC80073500AAACATAATTGTTAAGAACAAGTAAATTATGTTAAAATAAATGGGATAA
chr1:80782571-80782589
GCCATTGCTTCTCTTGACTGAGCCCCCCAA80782571AAGCATAATTGGGAAGAAAGATCATGGTACTGGATGATGAATGAGTGTA
chr1:83483252-83483270
AACCCCATGTGGCTCAGACAAAGGATCTTA83483252AAGGTTAAATGTTAAGAACCATTTATATTGAAGATCAATCAGAAAAGAT
chr1:85860397-85860415
TAGTGGCCAGCTTTGTTTAACGACCAATTG85860397AAGCATAATTTTTAAGAACAAGTAAATTAGGTGAAAGTAAATGAGTTAA
chr1:87169665-87169683
TCATATTCTCATTTGTTATTAAAATTAGTC87169665ACGCTTAATTGTTAAGGACTATCCTGTGTCGCTCGCCATCTTTGTGTCC
chr1:89572120-89572138
CCTATTCTATAGTCCTATTAAGTCTTTCTT89572120AAGTATCATTGTTAAAAACTAAGAATAACTTAAAGAATATTAACAAAGT
chr1:92468896-92468914
ATTTCATGGAAATACATCAAAAGTGCAATC92468896AAGCATAATTATTAAGGAGATAATTATTTTTAGAAATTCAGCAGAAGAT
chr1:93008539-93008557
TTCATTTACAGAGCACAGGCAAAGTAGATT93008539TAGCATAATTCTTAAGAACCCTAGGGTTTTCAGAATGGTAAATGTGCAC
chr1:93612920-93612938
TAATAGTACAGTCTTGGAGAGTTAGGACAT93612920AAGCGTAATTGTTAAGTAACATTTGAAAACAGTAGATGACTACAGGTAT
chr1:94722004-94722022
CCTTCTACTGAACTTGGGTCAGAATTTCTT94722004AAGAATAATTGTTTAGAAGATACTTTCTCTTACATAAATACAGAGTTCC
chr1:96248457-96248475
TAGTAGGTCTTCAATTAATAGAAGGCCTTA96248457TAGCATAATTGTTAAAAAGCTGAGGCTTTATGGGCAAATGAGAGTTTAA
chr1:96370222-96370240
GTTTGTAAGGCAAACTTGACCTAATTGCAT96370222AAGCATTTTTGATAAGAACTACACAACTGTGGAGTAGAGTCGGATGATG
chr1:96640427-96640445
ATCTGATAATTAACAACTATGTTCTGAAGG96640427AAGCATAATTGATATGAAAATATTTATAATGTATTTTAAGTAAAAATAA
chr1:98045876-98045894
TGAACACAAAAACCTAAAAATATTATTTAG98045876AAGCAAAATTGTTTAGAAGTCCACTTTGGCCAGTGATAAACCTAGAAAA
chr1:99451556-99451574
TCAATGGCTAGTTTGTTTAAGGAACAACTG99451556AAGTATAATTGTTAAGAATGAGTAAATTTGGAGAATGTTAATGGGATAA
chr1:100157379-100157397
AATCCCCTATTTAATATAAATAGCCCTGGT100157379AGGCATAATAGTTAAGAATTGTTAGTCTCTTTTCCCTTGGTATAAATAT
chr1:101960023-101960041
ATGTTTTAGGAAATTTTTCATGAGGAGTTC101960023AAGAATAATTGTTAAAAAATGAGTGAATGAGGTAAATGTATGTGAAATA
chr1:106400514-106400532
ATAACTTTATGAGATGTATCTTATAAAACA106400514AAGCATAAATGTTAATAATTATTAAATATTTTCTGAATATTTACAATAA
chr1:117783279-117783297
GCAGCATTGAGTCATCCAAACATTCATTCA117783279AAACATATTTGTTAAGAGCTTGCCCTGCGCATCATGGTGCAAGGCATTA
chr1:119447439-119447457
AGTAATGCTAAAATCACATGAGGGACAAAA119447439TAGCATAATGGTTAAGAGCACAGGCTCTGGGGCTAGATTACCTGGCTTC
chr1:120810319-120810337
AATTATCAGAGAGGCCAAGAGTTCAAGGCT120810319AAGCAAAATTGTTAAGTAGGTCAAACTGGAGGTGCTTCAACCTTTTGAT
chr1:152615165-152615183
CCACTTTATAGAGCACAGGCATAGTAGATT152615165TAGCATAATTCTTAAGGACCCTAGGATTTTTGGAATTATAAATGATGAT
chr1:155620729-155620747
TTAACAAACATGGTCCAACATGGTCAATGC155620729GAGCATAATTGTTAATAATGTGCCAGCTAAGGGAAGTAGACATGAAGCC
chr1:156718804-156718822
GGATCAGGGGGGAAAATCCCTGAAGTCTTG156718804GAGGTTAATTGTTAAGAACTTGGAGATCCCCCAGGAAGTTAGGCAGGCG
chr1:162713787-162713805
ATGTGCTTTTTTGGTCTGACTTTTTTTATT162713787AAGCATAATTGTTTTGAAATTTATCCATGTTGTTGTAGCATGCATCAAT
chr1:166512851-166512869
AAATTAAAGAATTTATGGTTAATTGACTTA166512851AAGTATAATTTTTAAAAACAAGAACAATGGAAAAGAACATAATATCTAT
chr1:169292665-169292683
ATATTCTGTTTCTTTTTTGTTACAAATATA169292665AATCATAATTTTTAATAACTTCCATATTTCCTAATCCAATCTGGTAATA
chr1:172362957-172362975
GGCTTTCAAAGCAAGGAAAGATGTTTTTTT172362957AAGCATAATTACTAAGAATAGAAACAACTTTGAGGTGTTCTTTTTGATT
chr1:174756652-174756670
GGCAACAAGAACAATATATGTAGATAAGAA174756652AAGCATAATTTTTAAAAAGCATATTTGGGAAATAATGAGAAGTTTCATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/GTTCTTAACAATTATGCTT
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : GTTCTTAACAATTATGCTT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
8.293 | 8.281 | search_minus_done; http://172.18.8.78:28018/match?q=AAGCATAATTGTTAAGAAC&k=3&no_gap=1&offset=0&limit=50
8.305 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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