GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-17 02:41:16, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:78421538-78421556
GCAACAAGCATACTCAAGTCTCGTTTCTAA78421538CTACCATACTCTACTAAAAGGAATAAGAGCTCCTTGAAGAAATAGCTGA
chr1:244118854-244118872
AAAGTGCTTTGCAATTATGAGACATTATTT244118854TTATGATATGCTACTATAATTTCTTTTCTGTCTTCTCCTCCTAATTTCT
chr2:8954361-8954379
GCTAAGCTACAGGAGAAATTTTCTCCTTAA8954361CTACGATACGATTCAATAAAAAAGACCAATGTAATCAAATCTTACTAAG
chr2:68460108-68460126
ATCACAAAGATATCCTAGCCAGGCTACTAT68460108CTACTATAATCTACTATAATATACAATCACAAACACTTTCTTATTTGCT
chr2:142319331-142319349
TACATGTTATAGTACAAAGACAACCTCTTT142319331CTACTATACTCTAATATAAAGACAAAATGTGTTTGTCTTATCTAGAATT
chr2:164236591-164236609
GAATGTCAGAGTGTACTTGCATAAACCTAG164236591CTAGGATACCCTACTATACATCTAGGCTATATAGTATGGGCTATTTGCC
chr2:185113675-185113693
ACTTTGATCACTGTGCTAAGGTGGTGTCTG185113675CTAGGATTCGCTACTGTAAACTTACTGTGTTTTCCTTGTAATTATTGAA
chr2:199459335-199459353
TGACATTTCTCGATTCAAGGAATGAACAGA199459335CTACGCTACTCTACTCTAATATTTAACAGATTAATTGTTGAGCTAGATA
chr3:28824709-28824727
CCAATTTCTGAGTGTATCAGTCAGGATTGG28824709CTACGTTATGCTACTGTAACAGCAGTCTTCCAATCTCAAGAGTTTAGCA
chr3:94857321-94857339
TGAGTTCTTTTTGTTTTTGGCTATTGTATA94857321CTACTTTATGCTACTATAAACAATCGAATACATATAATCATTCAAGTGC
chr3:132185710-132185728
TTGGGCCATCCATGGAAAAATTAAACATCT132185710TTATGATACACTACTATAATAATTTCTTACGTGTATTCTTTTTCTGTCA
chr3:142089152-142089170
TACAATATAAATTTGGCATAACACTATTGG142089152CTACTAAAAGCTACTATAAATGGTTAGAACTTTTTTAAATTACAGGATT
chr3:189197738-189197756
AAAGAAATAACTAGTATGATATTTGCCCTT189197738CTACCATACACAACTATAAACTAGAGAAAATGCATGAAGAAAATATTTT
chr4:15362647-15362665
AAGGATTTTCTCTTCCTCATCTATTATCTT15362647CTATGATAAGCTACTATATTTCTAATAAGGAAAAGCAATTCTATTTAGT
chr4:59303998-59304016
GACTGTGAAAAGATTTTACATGATATTATA59303998CTATGATACCCTACTATAATTTAAAATAGTGGATTTTTTATTTTACTGA
chr4:162263789-162263807
TTACGTTACGTTACGTTACGTTACGTTACG162263789CTACGCTACGCTACGATACGATGTTATGTTATGTTATGTTATGTTATGT
chr5:25972858-25972876
GCAAAATATGAAAAAGACAGGATAAGCATG25972858CTACTATATGCTACTATATACTAAAATAAAAAAGCATTTATAAAAAATG
chr5:32206475-32206493
GTCTGGGGTCCGAGTTTATGCTATTGATAA32206475CTACAATATGCTACTATGATCAAAAACATCTGTGTTAGCTGAAAATGGA
chr5:130341148-130341166
ATCTCAGAAATCACCACTAAAGAACTTATC130341148CTAAGATAAGATACTATAACTAAAAACCACCTATATGCCCAAAACTTGA
chr5:146373421-146373439
TAAGTCACATATAAACTAGATTCTGGCTCC146373421CTACGTTAGGATACTATAATAGTTAGTAGCTGTTCTCTAAGGATCCAGA
chr5:152000385-152000403
TCATTGAAAATTAAGAGTTGGTTATGCTAG152000385CTACGACATGCTACTACAATCTTAAACCTTTTATTTCTTTCCACTTTTG
chr6:14801024-14801042
TGTAAGTGTTCTGAGCATGTTTCAGGTAGG14801024CTACGCTAAGCTACGATAAGTTCAGTTGATGAGGTGCACTTAATGCATT
chr6:55752720-55752738
ATACGATACGATACGATACGATACGATATG55752720ATACGATACGATACGATAAATAAATAAAATTAAATAGTTCATGGTACTC
chr6:129206284-129206302
ATTTTATTCAAAATAGCTACAACATACAAT129206284CTACTATAGGCTGCTATAATCTGCATTCTAGTATATATTATTGTCTTTG
chr6:132411765-132411783
AATGAAGTACCTGTTACTATATTTGCTTTC132411765CTACCATAAGCAACTATAAAACTGGACAATATATAGGCAACTGATCTCA
chr6:133643850-133643868
GGCACATTGTATCATAAGACTATGTCTTAA133643850CTACTATAACCTACTATAATTCCTAATAAATCTTGTAAATAAGCATATA
chr6:159533082-159533100
CTACCGTACACTACCGTAGGCTACTGCACA159533082CTACTGTACGCTACTATAGACTACTGCACACTACTGCACACTACCGTAC
chr6:159533262-159533280
CTACAGTACACTACCGTAGGCTATTGCACA159533262CTACTATACGCTACTGTAGACTACTGCACACTACTGTAGACTACTGCAC
chr7:84669883-84669901
TAAGTGAAAAGGTAAAATGAAAAAAAAAGT84669883TTACGATATGCTACTACAAACGCAGGGACAAAAAGATCCTATAACTATA
chr7:122257186-122257204
AGCATCTGCTTGACATTATTTCTGTCACCT122257186CTACTATAAGCTACTGTAAACATGACCTCCTAAAACATACAACTTGTGA
chr7:142185036-142185054
AGATCTACTGTACAGCCTTGTGTCTGTGGA142185036CTACGATACTCTACTATATACTTAAAAGCCTGTTAAGAGGATAGATCTC
chr7:143748783-143748801
TTTTTGCCATAAGTATATGCTGGTAATCCC143748783ATACCATATGCTACTATAAGAGAGTACTTGTAATCACACAGAATAAATA
chr7:144969253-144969271
ATTAATAGTATATTGATAAATAAGTCTCAT144969253CTAAGATAAGCTACTTTAAGGAGCTCATTTATTTTGAAAGGTAATTTGC
chr8:38070244-38070262
ACCTTGATCACTATGCTAAGGTGGTGTCTG38070244CTAGGATTCGCTACTGTAAACTTACTGTGTTTTCCTTGTAATTATTGAA
chr8:90396395-90396413
TATTTATATGAAGTCCTAAAACTGGTAAAA90396395CTACTATACGCTAATAAAAATTAGATTAGTGGTTATTTGTTGTGAGAGT
chr9:3973623-3973641
CTAATCGTGCTAATCCTAGCCTATTCCTAA3973623CTATGATACTTTACTATAAAAATCATTTTCACACAAAGCTGTTGGGAAA
chr9:10096168-10096186
AATATCATACAGGCAATAATGTTATTTCTT10096168CTACGGTACACTACTAGAATTGGGCACTGGTCTGACATATAGAACAGGA
chr9:110212561-110212579
AGATTACAAGAATGAGCCACCGCGCTCGGC110212561CTACGATACGATATTATTAACTATAGTCCTCATGAAGCATATTAGAGCT
chr10:2528854-2528872
ACATGAAGAAAATACTGGAAATAGCCTTCC2528854CTATGATACGATACTATTAGCAGTATAGTATTGAAGTGAATTTTGCTCT
chr10:44683845-44683863
TCTTTACAGATGACTAAACTTTGATGTAAT44683845CTACGAAAAGCTACTAGAACTAGTAAATAAGCACGTTTGTATGATACAA
chr10:88018166-88018184
ATATTTGAGAAATGTATTTGTCAGTTTAAG88018166CTAAGATATGCTACTGTAACAAGCAACCCCAAAATCTCAGTGGCTTAAA
chr10:97641428-97641446
TTAGAATGAAAAAAGATAACTTTTAAAGAC97641428CTAGGATAAGATACTATAATTGACCACAAATTAGAACTGTGCTTCCTAG
chr11:25159013-25159031
CTATCCTTGAGTAGCATGTTACTGTACTGA25159013CTACGGTAAGCAACTATAACACAATGGTAAGTATTTTTGCCTAAACATA
chr11:37482545-37482563
GATAGGGTAACTGCTTCCAAACTTGCCCTT37482545CTACCATAAGCAACTATAAAATCGAATAAAATATGTGAGGTAACTCTTT
chr11:39319061-39319079
TACTGCAGAAATTAAAAGAATCATCAGAGG39319061CTACTATAAGCAACTATAAACCAATAAATTAGAAAACCTAATAGAGATG
chr11:59853958-59853976
TTAGTGATTATTTGCTGCACAAATAATTAA59853958CTACTATAAGCTACTAGAAAACGCCACACAGAACCATGACTTCAGGACT
chr11:61838955-61838973
ATAAAAATAAAGAACAATGATAACAACAGA61838955CTACAATAAACTACTATAATAAAAGTGATGTGAATGTGATCTGTCTCAA
chr11:69466864-69466882
CAGGGTCGGGAAAGGCCACCTGTCCCACTC69466864CTACGATACGCTACTATAAAGAGAAGACGAAATAGTGACATAATATATT
chr11:132813329-132813347
GGTCACAGATTGCGCTTTCTCTGCCTCTCT132813329CTTCGAGACGCTACTTTAAGATTCAGTTGGGCACGTTCTGCAGAGCTCT
chr12:48015245-48015263
ATTCATCCATCCAACAAATATTTTGAGCAA48015245CTACTATAGACTACTATAAGCTATTCTAAGTGTTAGGAGTACAGTAAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/TTATAGTAGCGTATCGTAG
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : TTATAGTAGCGTATCGTAG | format : html | download : | debug : 

0.011 | 0.011 | search_start;
2.777 | 2.766 | search_minus_done; http://172.18.8.78:28018/match?q=CTACGATACGCTACTATAA&k=3&no_gap=1&offset=0&limit=50
2.789 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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