GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-04 04:08:01, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:60097-60115
ATAAAACACTTGATCCTAAGCAGTAAACAT60097GATTCTTCAGCTTCAACTTCATTTCTTTATAAATAACTATTTATGAATT
chr1:3681202-3681220
AATAAAATAAGTTTTACAGAACAGTACTAA3681202GATTCATAAACCACAACTTTAAAACTGCTGCATCCCACACCTTTTGCTT
chr1:8585067-8585085
CGATTCTAAAACAGATACAAAAATAAACAA8585067AATACCTAAACTTCAATTTCTAACACAAAAGTCAATGCATACTTTTTTT
chr1:12497967-12497985
TGTTGGGATGGGAGACAGGCTGGGCCCTTT12497967GACTCCTAAAATTGAACTTAGGTTGAGCTGGTTGGCAAATGTGGCAATG
chr1:14111548-14111566
TACTTTGTAGTGAGTTTAGCACAAAACTGG14111548GATTCCTAAACTTAGACCTGGGTAATATGATGATTGTCATTAACGTGTT
chr1:18632713-18632731
CAGCCTCATCTCCTACCCTCTCCCTCTTCA18632713GCTTCCTAAACATCAGCTTCCGGACACCTTGGCCTTCTCGCCAAGCTTG
chr1:32260671-32260689
GCACTGAGGACATTTTTTGTGCAGAAAGTA32260671GTTTCCTAAACTTTAAATTATGTCCTTAGGACAAGATTTCAGAAGCAGA
chr1:44556093-44556111
CTAAATTCTCAGCATAACTGGATGACAGAG44556093AATTCCTAAACTTTAAATTACCTGTAAGTAGAAAAAATAAACACCAAAT
chr1:45274355-45274373
TGCCTTCAGGAGCTTGGGCCTCTCCTGCTC45274355CACTCCTAAACTTCAGCTTCTCAGCAAACAGGCCTCCCAAGTCCCTGCT
chr1:49365376-49365394
ATCCACACTGATATGAAACAAAATGACGAG49365376CATTCCAAAAATTCAACTTTATTCTTTCATTCATTTAACAAATATTTAT
chr1:51307522-51307540
CAATTAAAAGCATGGCCTGAATAAATTAAT51307522GATTCCAAAACTTCACTTTAACCATCAGTTTGTTTCCTTTCCATAAACC
chr1:56465794-56465812
CTACTAGCTGTGCCATTGAATAAAGTATTT56465794AATTGCTTAACTTCAACTTAGTCATTTGTTGAATTAAGTAGTAATAGCT
chr1:60697045-60697063
ATTCTGCCACAAACTTCCCATCCAATTCTG60697045GATTCCTTAAGTACAACTTATTTGCATGTGTCTTCCTCCTTCTAGTTCA
chr1:71537859-71537877
TCTTCATCCTCATCCTCTTCTTCTCCCTCT71537859GATTCTTTATCTTCAACTTCCTTTAATATAGATGCAGGACCAACTGCTT
chr1:73742147-73742165
GGTGGGTGGAGACAGCCTGGTTTTATTTGT73742147GATTTCTCAACTGCAACTTAATTTAGAAACCTCAACCTCCCTTTGACCA
chr1:78648533-78648551
GAAGTGAAATTGAAATTTAAATCAAAATGT78648533GATTCCAAAACTTTGACTTGTTTCCCCTCTTCTGATGCAGATGATACTA
chr1:79869702-79869720
CTGCTATCTGGATTTTCCCAAAGATCCGCT79869702AAATCCTAAACTTCATCTTGGTCTGAAGAAGGGCAAGTCCTCTCTCCAG
chr1:81670783-81670801
ATCTATTTTTCCAGCCTTGAATGGAAACTT81670783CATTCCTAAACTGGAACTTTTATCTAAGAACCATGAGAGAAAGTCTAAT
chr1:89092878-89092896
AGTTCTAGATACACAGAAATTTGTATTAAT89092878GTTTCTTAAACTTCCACTTCACTTGCCTGTTTCTTATTCCTGGGTTTCA
chr1:98121127-98121145
TGTTTTGCTTTGCTTTTGCTTAAACAAGTT98121127GATTTCTAAAATTCAGCTTGGACAAGGAAATTAAAATTTTGGTGACAAC
chr1:104231736-104231754
CTAAAAACACAATACCATATAAAACGTTGA104231736TATTCTTAAACTTCAACTGTTTTAAATAAAGTGCTACGGAAATTTACTA
chr1:108103699-108103717
GCTAATTGTTGTAAAAATAACTTGCCATAT108103699GATTACAAAAGTTCAACTTAGGCCTCTTGCACAATTTTAATTGTATTTT
chr1:108243840-108243858
AGACTCTGGTTATTAGATCTTTGTTAGACG108243840GATACCTAAACTTCAACTCTTGACTTTTGTGCATCCACAGGTCCAACAC
chr1:116301445-116301463
GGAAGCAGCCTGTGGCCCTAGCCAGATACA116301445GATACCCAATCTTCAACTTTTTCAGACATCAGAATTGTGAGCCAAATAA
chr1:119246214-119246232
GTACAGCACAAACAAAGGAAGGATGGAAGG119246214GATTTCTAAACATGAACTTCTGTGAAGATCAGAATATTTTAATATACTC
chr1:120583713-120583731
AAAAAAAAAATATATATATATATATATATA120583713TATTCCTGAACTTCAATTTTTATTTATTTTATTCTCCCTTGCTTTGTTT
chr1:155197607-155197625
ACAGTGAGTCCAGCCCACCGAAGCTGAGAG155197607GATTCCTAACCTTCCTCTTCAGAGAGCCTCAGGTTAGGGAACGTCCAGT
chr1:155214774-155214792
ACAGTGAGTCCAGCCCACCGAAGCTCAGAG155214774GATTCCTAACCTTCCTCTTTAGAGAGCCTCAGGTTAGGGAACGTCCAGT
chr1:158355032-158355050
GCGTGGCCAGGGGAAATATAGTGCTACCTA158355032AATTCCTAAAATTTAACTTTATTCATAGAAAAATATTCTAAAGGAAATA
chr1:160189097-160189115
AATGAAATCCAGATGACCTCATTCACTCCA160189097GATTCCAAAGCTCCAACTTGCCCAAGGCTGGAAAAAACCATCTCAGTGG
chr1:164005861-164005879
CTTTATAATCACCTATCCCTTCACTCTAAT164005861GATTCCTAAACTGCCAATTTACTCATGACTCTCTGTCCCCAAGCTGCCC
chr1:164192526-164192544
TAAGCAACAGGAACAAATCTGGAGGCATCA164192526GATTACTCAACTTCAAATTATACTACAAGGCTTAAAAAAATAGGCACTT
chr1:170295515-170295533
TTCTTCATATGTTCCCCAGATTGTAGTTCA170295515TTTTCCCAAACTTCAACTTATTGCTCTTTGCTGGACTGTAAGACCAGAG
chr1:175643097-175643115
GCCATCCACCTAGGAGGTGCTGGAGGCACT175643097GATGCCTAAACTTCCCCTTCACCCTCTCACTGCAGGGCCCAGCACTGTG
chr1:179869160-179869178
TCATTTTCCTAAACGAGATGCTCTTTTATT179869160TATTCCTAAGCTTTAACTTTTTTCCTAAGCTTTTGTTTATTCCTAAGCT
chr1:179869197-179869215
AAGCTTTAACTTTTTTCCTAAGCTTTTGTT179869197TATTCCTAAGCTTTAACTTTTGATGTTATATGTTTAATATTTGATGTAT
chr1:186441786-186441804
CAATACATTGTTGGCTTACCAGGGTTTACA186441786GTTTCTTAAACTTCAAATTGCTGCTGAGAAAACTTTTGTCAGAAAAGGG
chr1:190201186-190201204
CAGAAGATTCCAAAATGGGCCAAACGCTCT190201186GATTCTAAAACTTCAACATGTACTTAGAAAGAAAACACAACACACAAGC
chr1:192713003-192713021
TATATATACCTATAAAGATAATTGACTATA192713003GCTTCCTAAACTACAAATTGTCATAAAAATGACTTCTGTCCTATATCAA
chr1:195266539-195266557
GTTAAGTCTTATGACACTGTTATACCCAAT195266539TATTTCTAAACTTCAAGTTCAGTAATTTTATAGGGTTCACACTAATAAC
chr1:200185745-200185763
AAAACTTTGGAATAGATGATGCAGAGCATA200185745GATTCCTAAGCCTCAACTCTTCTTGCAAAACTTGAAGGACCAAGCTTTG
chr1:202385009-202385027
CACCAAAGCAGTGTTTGTTTAGCAATTCTA202385009GAGTCGTAAACTACAACTTCCCACTGAGAAAAACTGTATTTGATCCTGT
chr1:205808269-205808287
CAAACTCCTCAGCATAGCATACAAGGCCTA205808269GATCCCTAAACTACAACTCCATTTCCTATCAGTTTTCATCTCCTATTAC
chr1:208622871-208622889
TTCAAATTAGTCTGCCTTTCCTTTCCCAAA208622871TATTCCTAAACTTCTACCTGCAACCACCCCCACAACCACCAGCAGAATG
chr1:208725054-208725072
TGTGACTTTAGGTATTAGATCCAAAATCTG208725054GATCCTTAAACATCAACTTTCCCCTCTCCCCTCTAAAATGGCACGATCT
chr1:210048109-210048127
GATGTACCTTTTTGCAAAACATTTAGTCAC210048109TGATCCTAAACTTCAACTTTATCCCCCTTTTTCTAGAAAAATTAAGAAA
chr1:216614828-216614846
CTATAAAGTACAAAGCATCACAGTCAAGTT216614828GATTCCTAAAATGCAAGTTTGATTTACCCTTTAGAAAGCCAGTGTAATA
chr1:218247753-218247771
TTACAATCACCTGGGGAGCTTTTTTAAAAA218247753AATTCCTAAACTTCACCTTCAGCTTTTTACTATTATTGCTCTGGGATAG
chr1:221698794-221698812
AGCAGGAAATAAAATGTTTATAGATTGAAT221698794GCTTCCCAAACTTCAATTTTTAAATACTCTAGAGAATACTATCTTCCAG
chr1:221958895-221958913
AACCAAGGTGTTCTTAATACCTTTAATCAG221958895GATTTCTAAACTTCGATTTACACTAAGTCTTCAGGAAAATGCTAGGAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/AAGTTGAAGTTTAGGAATC
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : AAGTTGAAGTTTAGGAATC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.767 | 6.757 | search_minus_done; http://172.18.8.78:28018/match?q=GATTCCTAAACTTCAACTT&k=3&no_gap=1&offset=0&limit=50
6.779 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).