GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-02 14:19:55, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:6588497-6588515
GACATATTTTGAAGAGAGAAGCCACCAGAC6588497CATCTAATGGGCTGAAAGTACCAAATGAAGGCTAGGGGATGCCAAGGAG
chr1:16865767-16865785
AGCAGGCACCGGAGCAAGTAGAGAGGAGGG16865767CACCTTTTGGACAGAATGTGTGGGACAAGAGCGACGGCTCATCCATTCA
chr1:16999704-16999722
GGCAGGCCCCCGAGCAAGCAGAGAGGAGGG16999704CACCTTTTGGACAGAACGTGTGGGACAAGAGCGATGGCTCATCCGTTCA
chr1:26035558-26035576
GCCGATGCCCACCGCCATGCAGAAGCCTAA26035558CACCTACTAGGCTGAAAGTCACCCCAGGGCACTAAGCCAGGGAGGGTTG
chr1:27562112-27562130
ATAGAAGAGAGACTGCGAACCAGCAGGATC27562112CACTTCTTGGACTGAAAGCCGCAGTGGGACGCCCCTTTGCCAGATTGGT
chr1:42727801-42727819
AAACCAGAAGCTGCTGAAAGACATACTTGC42727801CACTAATTGGACTGAAAATGAAGCTATCAGAGAAGTTAGCACAACTAAT
chr1:50788332-50788350
CTGCCTTGCACAGTTATTCAAGGATCCCAT50788332CACCTATTGGGCATAAAGTACCTAACACAAGACCTGGTCCACACAGGTG
chr1:64679244-64679262
TAAAGCACACACTGCTTACTTATCTGTCTT64679244CCCCTATTGGACTGCAAGCTCCCCAAAATCAGGAAACAGGTCTAATTCA
chr1:77824219-77824237
ATCACTCTGAGGATCTAGAAAAGACCAAGA77824219CAACTATTGGTCTGAGAGTTTACAGAATGATCCCAGAGATAAAGCCAAA
chr1:78200500-78200518
ATAAGCAAACACCCTTTTCCTTTCCATTTC78200500AACGTATTGCACTGAAAGTAGTATTTATGCCGGGCGCAGTGGCTCACGC
chr1:80266871-80266889
TTTTAGGTAACAATAAATAAATGAATAATG80266871TACCTATTGGATGGAAAGTGGCCAGCTTAGAAGTTTTATTCTGTGTAAA
chr1:83578088-83578106
CTGCAGGTAATTCCTTCATAGCTTGAAGAG83578088CTCCTATTGGGCTCAAAGTCCAAATCCAGCTTCTGTGAAGCCTTCTGTG
chr1:88344496-88344514
CCCGGCGTGCAGATAAATTCCTACGGACAT88344496CCCCAATTGGACTGAAAGATTGAGACACACAAGGGAGAGAATAGCTGAG
chr1:90915012-90915030
TTTATGTTAAAAGTCACACAAACATCATAG90915012CACCTATTTTACTGAATGTCTCCCATTTTAATTTAGTGAGAAAAATACA
chr1:151703368-151703386
GAGATGGGCTTATTTTCTGTCTGAATATCT151703368CACCTATTTGACTGAAAGCACCATGAGGGCAGGGAGCAAACCTAAAAAT
chr1:176612093-176612111
TCAGTCACAAAATAGTTAAGAGACTGTGTT176612093CACCTATTGGTCTGAAAATGCATTGCCTTTTCTGGGTGTCAGTTTTTTT
chr1:182021072-182021090
TTCCTGACACTCCTAAACAGTGAAACTCTG182021072AACCAATTTGACTGAAAGTTGTAGGGTGGGGGTGGTTAAGGAGAAAAAT
chr1:191615778-191615796
GTTTCCACTATGTCACACATGATAAAGGGG191615778CACCTATGGGACTGAAAAAGTTTATTTTCTGCCACAATAATTGGGGTCT
chr1:202790356-202790374
TCTTTTACATGAAGAGGTTTGTATGTGAAT202790356CACCTATGGGACTAAAAGTCTTTCCTAAAGGAAGCCAAGTAAGAAAAGT
chr1:212697996-212698014
AGGCCCATGCCTAGGATAACATTAGATGAT212697996CACATATTGAACTAAAAGTAAATGAGTCACAGTGGCTTACAGAGGGAAA
chr1:221007848-221007866
ACATCAGCTCTTCCTGGGCTTTGAGCCTGC221007848CACCTTTTGGACTGGAATTTACGCCATCAGCTCTCCTGTTTCTTAGGTG
chr1:224693625-224693643
TTTAACCGAAAATAGTACATTGATCCCTGT224693625GACCTATTGCACTAAAAGTTTGGTTATTTCTCTTGAAATGATTGGCTTA
chr1:241515304-241515322
AGAAATTTTGTTTTTCAAATGCAGGAATGT241515304CAGCTGCTGGACTGAAAGTGATGTATACTGTCTAGTGGACAGCATGCTG
chr1:242441485-242441503
GGTTCTTACTAATGACAAAGGAAAAAATCT242441485GACCTATTCGAGTGAAAGTACCAAAAAAAATGGTCATAGAAAAATAGGA
chr1_gl000192_random:127718-127736
GCACAGGAGGTGGTGGGGGACACTTGTTAC127718CACCCATGGGAATGAAAGTCTCGGCTTGGTATTCGACCTTCTCTGACGC
chr2:13997031-13997049
TATTTTATTTTAGTTCAAAAAGCAGAGCAT13997031CACTTATTAGAATGAAAGTCAGAAGGCCTCAGAGTTTACAGTCCTCAAA
chr2:16000985-16001003
CACAGGGAGCTTGTCAGCACTGACACTGGG16000985AAGCTATTGGACTGAAAATGATGAAAAAATATTGTCCAAAGAGAGGAAG
chr2:22563412-22563430
CTTTCTAAAAATGAGTTCCAAGTGAGGCTA22563412CACAAAATGGACTGAAAGTCTATAGGAGAAGTTAGAGTCTCTAAGATAC
chr2:45483223-45483241
TTTTTATGATTGCTATTTATTATCTGTTCA45483223TACCTATTGGAATGCAAGTTCTATGATGGCAGGGATTTTTTAATTCATT
chr2:76313950-76313968
TAACTCCAAAAAATGTCTAACGGCATGCTG76313950CACCTATTGGAGTGTAACTTGAATGCAAGATGATGGCGAGGGTATAGAT
chr2:76707073-76707091
CTTTCAGCCAAAATCTATCTCATTTTTACC76707073CACCTATGAGACAGAAAGTTATGATTTTTTTTTGTCTTTAGGAAAGACA
chr2:77640877-77640895
CTCCCCCAACCAGAAAAAAATGCACACTAT77640877CACCTAATGGAATGAAATTATGCAGTACATATGGACATAAGTTTCATAA
chr2:115811337-115811355
AGGTTTGTTTGATGAAAACACCTTTCTTTT115811337CAACTATTGGTCTGAAACTCACAATCATGTTAAATCAGGTTTTCCCAAT
chr2:116121176-116121194
CTTGACTTCTGTCAGTGGCCATATCTTCTT116121176CACCTATAGGACTGAGAGGATAATTCCTCTTATGCCTTTCTTCTAAAGG
chr2:132852962-132852980
TGGAATATGTTTTTTCATTCTGTTTCTTTC132852962AACCTATTTGACTCAAAGTTAAAGTGAGTCTCTTGAAATCCTGGTCTCA
chr2:139673084-139673102
TCCTCCTCATCTTTCTCTAATAGAAGCAGT139673084CTCCTACTGGACTGAGAGTCAGAGACAAGCTCTTAGAAAAAGTTGTTGC
chr2:157447235-157447253
GTAGACAAGTGAAGGCTAGAGTCAGAGAAC157447235CCACTATTGGACTGAGAGTACAATTAATAGAAAACCTTCAGCAGGGAAA
chr2:159241508-159241526
TTCTTATTGTCAGTCAAATTCAGTTACTTG159241508CAGCTATTGGACTGAAGGTCCCCCCACTTCCTTGCTCACCATCAGTCAG
chr2:164982486-164982504
CTAGGATTTAAAAAAATCACAATCCACTTT164982486CACCTATTGCTCTGAAAATTTTCAGTAACACCTAAAATTCAATGGATCA
chr2:173341302-173341320
TGTTCTATAATCAGGTTATACTAAAATGTT173341302GACCTTTTGGACTGAAATTTGTCATACCTATACTTCAAAGGTTTATATG
chr2:174460947-174460965
TTTCAGTTCGACAGGAGGAATAGCTTTAAT174460947CATCTATTGCACTGAAAGGTGGCTATAATAAATAATAGTGCATTGCATA
chr2:179554613-179554631
AATCTTTTCTTCAGGGACAGGTTTCTTTGG179554613CACCTCTGGGACTTAAAGTTTTTGAAACACAATGTTAGTTCAGACATAT
chr2:202727477-202727495
AACCAGGAAGGGGGTGACCTAGAATATCCA202727477CACCTGTTGGACTCCAAGTGGGTCGTAGCCGTATTCCACTTTACCTTAA
chr2:211589135-211589153
GTTTTTTGTTTAGCTTTATTTAATCTTTGA211589135CACATATTGGCTTGAAAGTCTGTTCATTTCACCCTCTCCCCATACTGCA
chr2:212811162-212811180
GCTTAATTTTTCAATGTCAATAATTATTAC212811162CACTTATTGTACTCAAAGTACATATAAAACCACTACAGGTTTGGATGCA
chr2:226024797-226024815
CCACACACACACACAAAATAAGTAAAAATT226024797CACCTATTGGCCTGAAAGTCTTCCTGATTTGGCATTTGATTACCTCATC
chr2:226592699-226592717
ACATCAGCTCTTCTTGCATCTTAAGCCTAC226592699CAACTTTTGGACTGAAACTACATCGTTAGCCCTTCTGGGTCTCCAGTTT
chr3:2607050-2607068
CTGCAATCTCCAGTCAAGTTTGAAAGACAT2607050CACCTATAGGAATGAAAATCTGTTTTTACTGGTAGATAGAGTATAAAGC
chr3:21909704-21909722
CGATGCAGTCTCTGTTGCAATTTTTCAACT21909704CACTTATTGCACTGAAAGCATCCATAGACAATCCATATACAAATGGCTA
chr3:32529123-32529141
TACCTAGAAAACACCTGGCATGTAGGTGTG32529123CATTTATTGAACTGAAAGTGGAGAAATATAAAATAATAAAGTCAATTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/ACTTTCAGTCCAATAGGTG
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : ACTTTCAGTCCAATAGGTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
5.116 | 5.106 | search_minus_done; http://172.18.8.78:28018/match?q=CACCTATTGGACTGAAAGT&k=3&no_gap=1&offset=0&limit=50
5.128 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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