GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-02 17:58:25, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:45356156-45356174
AAAAAATAAAAACTGTAATGCCTTTTAGTT45356156CACGTAACTTTAGTAATCTTTGGGAAATAAAAAATGTTAAAGATTATTG
chr1:47959032-47959050
GTGAGCTCCGAGCTTGGGCACAAGAAGCAG47959032CAAGTAAAGATGGTAATCTGCTGTTTCCACTTCTCTTGGTCTTTTAGGT
chr1:64798650-64798668
CTGATTCCTTAATACAATGGCCATCCAAGA64798650CAAGTAACGGAAGAAAACTCTTCACAGAGGGAGAGGATGCTGGCCACTG
chr1:77640741-77640759
TGAAAGAAGAAACCATAAAGCTTTTTAGTT77640741CACGTAACTTTAGTAATCTTTGGGAAATAAAAAATTTTAAAGATTATTG
chr1:100410627-100410645
CTTTTGCTATTGTGAAAAACAAAAATTGGA100410627CAAGTAAGGGTATTAATTTTAATTTTACTCAGGCTATTGCAATGGTAGA
chr1:111283996-111284014
GATTGAGTATAGTGCCCGCCATATTTTAAA111283996CAATTAATGGTAGTAATATATCATTTATGTCTTGTATCTGCATCCCAAG
chr1:155786152-155786170
CTGTACCATCACTAACAGCCATATACTTAA155786152CAAGTAACTGCAGTGATCTAGAGGTGTTGATTATCCCTGAGGGTATACT
chr1:194275266-194275284
CATAATGTCAGCACATAGCCTGTTGCTTTG194275266CAAGTAAATGTAGTAATCATGGAAGAATAGAGAGAAAAGATAAGAAGTC
chr1:200424015-200424033
CAGGCAGGCCCTTCTCCAGTGTATTCTTCT200424015CAAGTAACAGTAATGATCTTTATAAAACTCAAGCCACATTATATTGTAT
chr1:221741216-221741234
ATTTTGTGAGTTCTTCTGAAGGGTAAGAAG221741216ACAGTAACGGTAGAAATCTGACCTCTCTCCCAGAGATGTTTAACAAGCA
chr2:18866335-18866353
CATGTTGTGAATCAACTAAATGCTTGGAAA18866335CAAATAATGGTAGGAATCTGCTGGGGTCCTAGACAAGGGCTGATTGGAG
chr2:67280628-67280646
CACAGAGTAAGTATTAGATTAATATTATTA67280628TTAGTAACGGTAGTATTCTTATTATTAAATAGAGAAATGGGACTAGGTG
chr2:76701623-76701641
GCAAAACAAAAACTGTAATGCCTTTTAGCT76701623CATGTAACTTTAGTAATCTTTGGGAAATAAAAACAGCCTTAAAGAATAT
chr2:105036463-105036481
CAACTGAGATGCTTTTCCTTATGCGACTAC105036463CAAGTAAAGGTAATAATCCCAATCAACTTTTCCAGATTCTGAGGGTCAA
chr2:119572641-119572659
ATCAGCAAAGTGTGCATTTCTGCATCTATA119572641CAAGTAACGGTGGTTACCTTGGCCTCTGTAAATTTCATTTTCCATGGCT
chr2:126631782-126631800
AAAAAAATGAAAATAAACAAAAATTCTAAA126631782CAAGGAACAGTAGTAAACTTCCTGTGTGCTTGATAAGCTGGAAAGCGAG
chr2:127315356-127315374
TATCTTGTCATCACCAGCAGTAACCTCAGT127315356CAAGTAACGGTAGTAATCTCCTTTCATTTTCAAATAGAAGACTTTGCTC
chr2:153343973-153343991
ACAAATATGTTGCTAAGAGTTTAGTGTCTC153343973CAAGTAAAGGTAGAAATTTTACATTATCTATCAATGATATCGGCGAAAA
chr2:168829692-168829710
CAGAAAAGTAAAAACTGTAATGTCTTAGTC168829692CATGTAACTTTAGTAATCTTTGGGAAATAAAAACAGCTTTAAAGATTAT
chr2:183511486-183511504
TTCCCAAGTCAGTGAAACATAAGTATAACC183511486CAATTAAAGGTAGTAATATTGCTGAAGAAATTATGTATTAAGCAGAATG
chr3:27046928-27046946
GGTGGAGTTCAAGATCAGGCAAGAGAAAAA27046928CATGTAAAGGAAGTAATCTCCCAGCTGACCCGGGTACATAATACCCCTA
chr3:59089295-59089313
GAAAAATAGAAACTTTAATGCCTTTTTGTT59089295CATGTAACTTTAGTAATCTTTTGGAAATAGTTTTAAAGATTATTAGTAA
chr3:67364273-67364291
GCTGATATCAACAGTATCCAGGTAATGGAT67364273CATGTAACAGCAGTAATCTACACTTACAATGCAGTAGAAAGTGGCTAAG
chr3:71545207-71545225
CCTCAAGAACCTCAAGAGCTTTCAATTCTA71545207CAAATAAAGGCAGTAATCTAGATTTCTATTTAGTAAAATTCCAGAATTT
chr3:103205686-103205704
TTAAAATAGCTCTTTATTCAAATTCACTTA103205686CAAATAACTCTAGTAATCTTTTGACTTACAAATCATGAACATAGCTCCA
chr3:122295895-122295913
TGTATACTGCCAGGACTTTTCGTGATACAC122295895CAGGTAACAGTATTAATCTATGTTTTATTTCTCCACCTCCTACTTCACC
chr3:141538741-141538759
GGTGGAGTTCAAGATCAGGCTAGAGAAAAA141538741CACGTAAAGGAAGTAATCTCCCAACTGACCTGGGTACATAGCACCCCTA
chr3:148562098-148562116
ATTAGAAATAACAATTATAAATAAAAATAT148562098CAAGTATTGGTAGTAATTTGCTGATTGCTTTTTAAATATTAATATTGTC
chr4:13748784-13748802
AAGTAGATTAATCTTATTCTGAAGTGAGCA13748784AAAGTGAGGGTAGTAATCTCTAAAAATAGAGTAGCAAATTAGTTCTTTG
chr4:34683637-34683655
TTATGGAGAAACAGATAATAACCACACAAA34683637CAAGTAACGTAGGTAATCTTTTAAATTCTGATAAGTTCTCTGGGGAAAA
chr4:42679500-42679518
GCAAAATAAAAACTATAATGCCTTTTAGTT42679500CATGTAACTTTAGTAATCTTTGGGAAATAAAAAAAGCTTTTAAGATTAT
chr4:79304350-79304368
ATTTTATTACTAATTGGGACTTTTTGGTTG79304350CAAGTAATGGAAGTAAACTTGAAGTAGATTAGCAAAAATGTAAGACTTG
chr4:108672642-108672660
TCTCTGGTTCCTATAAGAATTTATTTCTAT108672642CAAGCAACAGTAGTACTCTATGTTACCTCATTGGTTAGCATACAGTGCC
chr4:126007839-126007857
GGCTTAGCACCCCAATCCCCCAGTTGTTCA126007839AAAGTAACTGTATTAATCTTGGGGTTGCTTCAGATCTTTCAGTCTGAAA
chr4:134417539-134417557
TCCTTTTTTTTCACTTTTTTGCCTGTAAAC134417539AAAGTAACTGTACTAATCTATAGTACATCAAGCAAAGTCCACCTTCACC
chr4:145877030-145877048
TTAAATTTCTGAGTCATCATTTTGGCAAAA145877030TAAGTAACTATAGTAATCTGGAATTTTATTTCATGACATCAAGTGTTTT
chr4:150076122-150076140
AAATAAATAAGGAATTCTCAGAATACTAAG150076122CAATTAATGGTAGAAATCTTTAAAAAATTTTTTTGGATAAAATAAAGCT
chr4:154389141-154389159
TTTAAATATAATGTTGTTGACTGCCTTTCA154389141CCAGTAACGGTAGTGATCCAAAATGCATTTTTTGGGTGGGAGTGGCTTG
chr4:161800975-161800993
ACCTGACTGCCTTTGAGCATCTGCCAAACG161800975CAAGTGATGGTAGTAAGCTCTGGATAAATGGCTTCCGTTTTTTTCTCAT
chr4:171815565-171815583
CTTTTCCGCAGCACCCCACTCTCCTGGTAC171815565CAATTTACGGTATTAATCTGTTTTCACATTGCTGTTAAAGACATACCCA
chr4:174074792-174074810
TTATCTTCTCTGAGAAGAGGATTATGATCT174074792CAAGAAACGGTAGTTACCTCTCTATTTTACTCACTTGAGCAAGGTACAC
chr4:180290409-180290427
ATATATACTTGCCATAGAAAAAACAGTAAA180290409CAAGTTACTATAGTAATCTGATATTTATTTCTGCATAAAAAATCACTAC
chr4:181982319-181982337
AATGAGGAAAAGTAAGGAAAATCAGATAAG181982319AAAATAACGGTAGTAATATAGGAGAAAAAAGATGAGGCCGTTGAGTACC
chr4:183186991-183187009
GCAACATAAAAACTGTAATGCCTTTTGGTT183186991CATGTAACTTTAGTAATCTTTGAGAAATAAAAACAGCTTTAAAAATTAT
chr5:3087190-3087208
TTGAAGATGACACCAAAAACACAGACAACA3087190AAAGTAACAGTAGTAATATTGAACTGTATTGAAATTAAAAATGTCTGTA
chr5:10365343-10365361
CAGGAGCAACAGTACAGGTGAATTTTTAAT10365343TTAGTAACGATAGTAATCTGGTGAGCTAAAATAAGTAAACTTTGGGGTA
chr5:29151489-29151507
AAATAGTAAAGTGGTTTCACCAGTTTTCCT29151489CAAGTAACAGTAATAATTTAAAAGTATTAAATATTACCAACTTCTGTTA
chr5:35411545-35411563
TTAATGTTTTAATTTTTGTAATTCAAATTA35411545CAAGTAATGATAATAATCTAAATACATACCAAAAAAAAAGCACTATGAA
chr5:102656286-102656304
ATGTATAGAAGAGAAAAACCAACAGTAAAA102656286CAAGTTACAGTAGTTATCTATTTGTTGCCTGCCAATTTCTCCCTTTGGC
chr5:146390297-146390315
TCCTGCTGTGTGGCCCAGTTCTTAACAGGC146390297CACGGATCGGTAGTAATCTGTGGCCTGGGAGTTGGGGACCCTGATCTAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/AGATTACTACCGTTACTTG
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : AGATTACTACCGTTACTTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
2.456 | 2.446 | search_minus_done; http://172.18.8.78:28018/match?q=CAAGTAACGGTAGTAATCT&k=3&no_gap=1&offset=0&limit=50
2.468 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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