GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-28 21:47:44, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:9630199-9630217
TTGGTTTTAGCACAGGCGAGGACAAGCTTT9630199TTAGTACATGGCAGCATCTTTCCCATTTTATTTTCCGAAAATTTTTCAG
chr1:12377414-12377432
AAGGTAGGTGGCTTTCGTAAGATAACACAG12377414CTCGTAAATGGCAGTATTTAAGTCTGCGTCTCTGACTTCAAAGCCTGTG
chr1:15973958-15973976
GCTGCTGCGCCTGGCTGGTGATGTTTCCTA15973958TTAGAACATGGCAGTATAGTTTTCTGCACATTTTGATTTTTTCCCCCTA
chr1:17879331-17879349
AGGGTAGATATTTTGTCCCAGGTCACACAG17879331CTAGTAAATGGCAGAATTTGAACCTGACCCTCTAACTCTGGAGCCCTCC
chr1:23498615-23498633
TGTGAAAGAGCTGAGTTCAGAGCCTGGCAC23498615CTAGTTCATGCCAGGATATAGTGGTTGCTGTTACTATTTGAACATGTCC
chr1:44528980-44528998
TTGGAATTGTTCTACTCTTGATCTGGGTTG44528980TGAGTACATGGCAGTATATGTATTTAAAGTTGATTTGTACATATTACTG
chr1:45463539-45463557
TCAAGCTGATTCCAAAGAATGTGCTCTTAA45463539CTAGTACACAACAGTATATTGCCTCCCAATGGTATATATCCAATATAGG
chr1:62156459-62156477
AAGTCAAATCCATTGTTTAAAAGTTAAAAA62156459CTAATACAAAGCAGTATATAACCCAGTGTTAGAGTGGTTTATAATAAAT
chr1:67789628-67789646
ATCCTCAAGCAGATGAAATGGATAGAAGTC67789628CCAATACATTGCAGTATATTGAACAGTGATTCAGATAATTGGCTTGCAA
chr1:68767173-68767191
AAGACTAAATAGGCATAACATGCAGAGCAC68767173CTAGTACTTGGCAGTATTGGTCATGCTGTAGGCTCTTAACATAAGACAA
chr1:72489501-72489519
AACAAAATAACATGGTAGGAGTATAAGGGA72489501CTAGTAAATGTCATTATATTTTATTATATTCTCCTATCAAATTATGCTA
chr1:79991787-79991805
TTGTTTCCAAGACCTATAGAAAGAGGTCAT79991787GTAGTATATGGCATTATATAGTGTGTGGTATAAAAATACATATAAATGA
chr1:80856469-80856487
CATATACAAGTAGGATAGGAAGAGTAGGTG80856469CTAGTATATGGCAATATAGGATGATTATAGTTAACAATAATTTATTGTA
chr1:86744675-86744693
CTGATGAATAATTAGTGGAAACTTAGACAT86744675TTAGCACATGGCAGTATGTAGTTGAATAAAGAAAATTAAACACAATTTT
chr1:118407064-118407082
AGGAGAAAACAGGGTGAATTGGGTCATCAC118407064ATAGTACATGGCAGTACATGCCTGTTGAACTGAAAAGAGCCTGTACTGT
chr1:152510842-152510860
CTGGGCCTTCTAAAGGGTCCACCTCAGTCC152510842CTAGTCCATGGCTGTAGATGGAGACACCACCTTCTGTGTTTCTTTATCA
chr1:170133711-170133729
TGACATGTGGCATAGTGTAAGTAAAAATGG170133711CAAACACATGGCAGTATATTACCACTTCCCCTTCTCATGCTTGAGGCAG
chr1:172294955-172294973
ATTTTAGACTTGCAAAGGCTTATTGTTTAT172294955CTAGTGCATGGCATTTTATTATATATGCTATTAACCAGACTCTAGAGCA
chr1:188124500-188124518
TTTATTCAAAATTTCCTCTGTGGAAGCAGC188124500CTAGTGCCTGGCAGTATTTTTGTTACTCTAATTTTTTGGTTAGGTTCAG
chr1:188179060-188179078
TATTTGCTGACTGTCAGTGGGCAGCACTGA188179060CTATTACAGGGCAGTATCTCCATAATTTATTTTCCTAGGGGCTCCCTTG
chr1:198303612-198303630
TGATTCTCAACCAGCAATATTTTGACTCCT198303612CAAGGACATGGCAGTATCTGGAGACAGTTTTCATTGTCAAACCAGGTAG
chr1:198727432-198727450
TATACTAAACCGAAGGTGAGACCCATGGCA198727432CTAGAACATGGAATTATATGTCTATGATTTTTACCTGTAGAAAGAAATA
chr1:202172272-202172290
AATATGTGGGTGAACCAGGAAAATGGGAGC202172272CTAGTACATGGAGGTTTATTCCAACTCCCTGTGTGATTGGCAAGTTAGA
chr1:219117990-219118008
GTAGATATACGCTTCATGAGGGTAGGATCT219117990CTAGTGCCTGGCAATATATGTTTGAAGATTAAGTAAACACGTGGGACTT
chr1:219237521-219237539
GACTGGAGATTGCATATATTGCATATATTG219237521CTAGTATATTGCAGAATATTGCATCCACTTTAGAAAGCAATATGGCAGT
chr1:223095119-223095137
ATAAACATTTGTCAAGTATAAATATTTGAC223095119CTAGTACATGGTATAATATACTTTATATCCCTTCTTAAGGGGTATAAAA
chr1:231023521-231023539
AAGGGTAATTTTCATTATGCTCAATATTAC231023521CTTATACATGGCACTATATAATCAGAACAGTTTTTTAGAAACTGTACCA
chr1:233035454-233035472
ACACTTACATGACAAAGAGCTATGCATTTG233035454CTAGTACATGGCTGTAAGTTACGGAGCATTCAACTACCAAACTTAACTA
chr1:235799003-235799021
AAGTATTTCTTTATAGCAACACAAAACCAA235799003CTAATACATGGCTGTATTTTCAGTATCTGTCGCCACAGAAGATACAACA
chr2:629690-629708
ATGCTTTAATTTGTAACAAACTTTAAACTT629690CTAGTACTAGGCAATATATATTTTACCTTTGATCTACTTATCTATGATC
chr2:5271739-5271757
AGTTGAGATAAACCATGCCTTCGCCTCACA5271739CAAGTACATGGCAGCATCTGCTGTCCACCTTCCTTCCTTGCCAGTTCCA
chr2:15784639-15784657
TGAAGAAGTGAATACCAGGTCCCTTTCCCC15784639CTAGTGCATGGGAGTAGATGGCAGAGAGGGTACAAGTAAGAGTCACAAG
chr2:20491092-20491110
TTCCTGCCTAAAGTCAGCCTCTGTCCAGAG20491092CTAGTACATGGAAGGAGATACTTCTCCTGGGGTCACATCTTCACTGGAA
chr2:20878901-20878919
ATGTAAAACAGCAATCTCTATTTTTCTTAA20878901CTATTATATAGCAGTATATATTTGTTGAACATGCTTGTATACTCTTCAT
chr2:22591472-22591490
TATTATTTGTGTCTCCTAGAATATATATTG22591472CTAATACATAGCAATATATATTCCAGGAGACACAATAAGAAACAAACAA
chr2:22597104-22597122
AAAGTGTTTTTCTCAGGCTAGTCTAATTTC22597104CTTGTACAGGGGAGTATATGGTCCTTTGTACATATTTTCCAGACTTCAC
chr2:36529125-36529143
AAAAATCAACAAGTGCAGATAGAGCTCTGT36529125TTCTTACATGGCAGTATATTTGCGCCGCTAGCTTCCTGTTTCTCCACTT
chr2:38412792-38412810
CTGGGAGTAGTGAGGCCACTTTCTCAGCCA38412792CTAGTTCATGCCATTATATATACATACCAGTTTTAACAATACATTATTT
chr2:45977872-45977890
ATATCATGGGTCATTCTGAGAATTGAATGA45977872GTAATACATGGAAGTATATAGAACAGTGTCTGAATGTGGGAGGTGCTTG
chr2:46756581-46756599
CTGCACTCATCTCAACCCTGCCCACAGAGT46756581CTAGTACATAGCAGTAGCTTAATAATGATTTGGCTGGGTGTGGTGGCTC
chr2:52137521-52137539
TACACAATCTAAATCAAATTATCTATACCG52137521TTAGTACATGGGAGTACATTATATAGTTGTGATTGATAGATAGCCTCTT
chr2:55705395-55705413
CACTAAAAGGACTTTTGTAAATCATTATTT55705395CCAGTACATGGCAATATTTTCATCAAACTAAGTTACTTCAATGGCTTAT
chr2:82292266-82292284
AAGATCTACATTTCATCCGTTTTATTGTGC82292266CTAGTACATGTCAATATTTTTTAACAATATGAGAGCCTGAATATACAAA
chr2:83221439-83221457
TTTTTATTTGTCATATGTACCTCTTTGGTT83221439CTAAGACATGGCAATATATTTATTAATAACCAATAACGTCAAGCTGAAT
chr2:84655067-84655085
AAACTGGCTTTTTTTTTCTTTGCACTGTGA84655067GTAGTACATGGCAGTGAATGACTGCTACTCTGGTTCGACTGACTGCCCT
chr2:101456703-101456721
CTCTGGGCTCTGACAGAGACTCCTGCATGT101456703CTGTTACATGGCAGTATCTAAATTTTACAGTTCCAAGGTTACCGGTGTG
chr2:103156652-103156670
CTCAGTTAAGTTATCACAAAGGACATACAG103156652CTAGTAAATGGCAGTATCATTTAGAGCAGTCTGACTCCAATGTCACTAA
chr2:103389509-103389527
ATGTTCATTATTGTCATTATCACTGTCATC103389509CTAGTACATGGTAGTTAATATTATGCCATCTGTACTGACCAAGATATGC
chr2:104253503-104253521
TTACTGAAATAAAGTATGAACGGTTGATGC104253503CTAGCACCAGGCAGTATATCAAAGGGTGGTCTACTTATTGTGTTATTTT
chr2:104659740-104659758
AGTGGAAATTTGAGGGATAAATTTTGAAGC104659740CTAGTACATGGCAATAAAAAAATCTGTATAGCAAATTGGGAGTTAACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/ATATACTGCCATGTACTAG
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : ATATACTGCCATGTACTAG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
4.163 | 4.152 | search_minus_done; http://172.18.8.78:28018/match?q=CTAGTACATGGCAGTATAT&k=3&no_gap=1&offset=0&limit=50
4.174 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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