GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

NOTICE:
nyaan

2025-05-12 13:51:15, GGGenome : Human genome, GRCh38/hg38 (Dec, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:25205576-25205594
ACACATGGTAGAAAACAATGAAAGCCTCTT25205576GTTAAAGCTGAGAGCTCCTGCTCACCTCTGGTTTTCATTTCTCACATCA
chr1:33557391-33557409
TGTGCTGTGTTTCTGGAAGGGCAAGGAAAA33557391GGTAAAGTTGGGAGATGATGTCCCGCGAGGCAGCCAGTTCTGAAAAAAG
chr1:51885134-51885152
TTTGGTGAGCCTTGTCTCCCTATTATTCTG51885134GTGAAAGTTTAGAAATCATGAAAATTAAAAACAGCTCATTTCTGTGTTC
chr1:57524034-57524052
TTTAAACAAATATATTTAAAAGGGTTTGAA57524034GATAAAGTTTAGAAATCATCACAGGAAGAAACACCAAAGGCAAAGGAAT
chr1:74210628-74210646
GAATTGAATAAGAAAGATCACTTATGACTG74210628GTTAAAGTTGATAGAGCTTCTAATTAAGCATTATCCAGTCAAATAAAGA
chr1:74772488-74772506
TAGGCTGTTTCAGTCTAAAACCTGCATTTA74772488GTTAAAATTGTGAAATCATTAAAAAAAACTTCGTATCTTTAATTACATT
chr1:82773064-82773082
TAGAAGGATTTTCTACAGTAAGATCCGACA82773064TTTAAAATTGTGAGATCATTTGTCCAAGAATAACCAAATATTGTTGCCT
chr1:88833673-88833691
AAATATGAGCACTGGAAACAGTTTCATGGA88833673GTTTAAGTTGAGTGAACATCGGCCATGAAAATCCATCACGAATACTTTT
chr1:106145636-106145654
GACTAAAGTACAGTAATTAATTTTATTGAT106145636GTTCAAGTGGAGAGATGATTTAAATGCTGAGAAAGATGGAAAAATATGT
chr1:110697073-110697091
CACAGCAGATAGTTGGGAAGCTATTGTAGC110697073ATTAAAGATGAGAGATAATAAGGGCCTGGCCTGAGTCAGTGACCCTGGA
chr1:115284918-115284936
TGCTAACTTTCCTGGAGGCTGGAGAGTGCT115284918GGTAAAGATGAGAGATCACACCTCCCTCCTCCTCCTGCTCTGTCCTCCC
chr1:116061022-116061040
TTGGACTGGGGCATGTCTATGCCTCCCTCC116061022TTTCAAGTTGAGAGAGCATGAACACAGGTTCTATTCACTAAATTAATCC
chr1:118383436-118383454
TAAAACACACAAATACTCCAACCTGTTCAT118383436TTTTAAGATGAGAGATCATAAAACTTAGCATATGGTTTCAGAATGTCCA
chr1:145755767-145755785
AAAAACAGAAGCACTATGGCCTTTGAGGAA145755767GTTAAAGGTGAGAGATTAAGAAAAGGCAGAAAAAATCTGATTAGAAACT
chr1:146548390-146548408
AGATATAATTAAATTTGCTGATCAGCTAAT146548390GTTAAAATTGGGAGATAATCCTGGATTCACTGGATGAGCCCAGTGTAAC
chr1:147607977-147607995
AAGATGACTCAGAGTAGAGTCCAGAGGAAC147607977TCTAAAGTTGAGAGATCAGGTAAAAAAGGGACCTGCAAAGGAAGCAGAT
chr1:154510710-154510728
GGTTTCTGGTAGAAGACACGAGAATCTTGG154510710GTCAGAGTTGAAAGATCATCTACTACAGTAGCCAGTATTTTAAAAAAAC
chr1:164025589-164025607
GTATTGAATGCATACATGTTGAAAGAAATA164025589TTTAAAGTTGAGAAATGATCAAAATTGAATAGAAGGTAATCAGGGAAGC
chr1:180062001-180062019
TGGGATATGAAATTATCAATCTAATTATAA180062001TTTAAAATTAAGAGATCATATTAAATTATTTTAGAATGGTGGGATTATA
chr1:191766477-191766495
TGTATTTAATTTCTTTTTCTGAACACTTAC191766477GTGATAGTTGAGAGCTCATTTAAAAAATATGATAATCTACTGTCTGAAT
chr1:195197051-195197069
TTTACTGATTATTTATAAATTAAAAATTTT195197051GTTAAGGTTGACAGAGCATGTTTCTTTCTGTTTTTAAATTTACCTGTCA
chr1:198365905-198365923
CAGGGATAAGGCAATGCAGCAGCTATCAAT198365905GTTAGAGATGAGAGATTATGAGGGTGAAATCATGATATAAATGTTTATA
chr1:199174899-199174917
ATCCTTCTTCATTGCATCTTTTATGTTAAG199174899GTTAAAGTCAAGAGATTATGACTCTTAGAAGAAATCATAGAAGTAAATT
chr1:199296170-199296188
AGCGGAGGGAAATCCAGGACAGGAACAAAC199296170GTTAAAGCTCAGAGATCCTACTCAGCATAACATGTTTGAGGAAATACAA
chr1:202818929-202818947
AGGAGGAATCTGTAGTCTTATTTTGGTTCT202818929GTTAAAGTTGAGATATCTTATCATCCAATGGAAGATGTTGAATAGTCAG
chr1:206109076-206109094
ACCATTTCCAGTATTGCAGAGTCATGGAAG206109076GTTGGAGTTTAGAGATCATCTCACCTATTACACAGGTGAGGAGACTGGG
chr1:206546868-206546886
TCTATCAAATGTGCATCTCTTTAGCACCAT206546868CTTAAAGTTGAGAAATCATAAGTAGGACCGTTGTAAGGAGGGAACCATC
chr1:210082155-210082173
TAAGAAAGAGTTAAACTTGGAATATGTGGG210082155GTTAAATTTTAGAAATCATGATATTTGGTGCATATTTGAGTTTTAAGTT
chr1:219532605-219532623
AATGAGATAGAGAAAGACTGGAATTGGTTG219532605GTTCAAGTTGAGAGAAGATGGTCAGGGAAGGTTCTTTAAAGAGGACCCT
chr1:235466112-235466130
TCTCATGAGTTCAAATACATCTTGGCATGC235466112TTTAAAGTTAAGAGACCATGCAGAGAAAGGCTCAAAATTAACAGTCTGT
chr1:236864787-236864805
ATTCATCACAGTCAGTTAAAATTCACTTCA236864787GTTAATGTTTATAGATCATCTTCTACTTACCAGGCATTATACTAGAGAC
chr1:238895342-238895360
TATTCATTTAAAGTGTATTAAAATAATTAA238895342GTTACAGTTTAGAGAACATCTTTCATTTAAGAAAACTCACAGAGAGGAT
chr1:245186557-245186575
GAGAAAGTGAGCTTGAAAGGGGGTGTAGGA245186557GTCAAAGGTGAGAGGTCATGACGTCAGTAGTCCAAACACCTGGAGGTTT
chr2:3160507-3160525
TCTCAATTGCAAAAGCGATCCTTATGTTCT3160507GTCAAAGTTAAGAGATGATTCATAATTTGTATCTGTGTACTTGGCAGAG
chr2:14980939-14980957
ACATATTTTGATGCAGTAGAACTGTTGAAA14980939GGTAAAGTTGGGGGATCATTTAGAAAGTAGATCTAAAAGACAAAGAGGA
chr2:30228389-30228407
CTTCTTGGCAAATGCAGTGCAAGACGCAGT30228389GTTAAAGTGGAAAGAACATCTGACCAGCAGTCTGAAGACCTGCGTTAGG
chr2:32396026-32396044
GAATTTTAGTGCATGAAATTTTAGAACCTG32396026GTTAAACATTAGAGATCATGTATTGAAACTTCATTTTTACAAATAACTA
chr2:35190212-35190230
CACTTAAAAAGTTTTCCCCTAAATGTTCTC35190212AATAAAGTTGAAAGATCATATATCACCAGCTTGTTTTCTCTTTCACACT
chr2:40767290-40767308
AGATTGAAACAGAACACGATGGAGCTGGAA40767290GTTATAGTTCTGAGATCATCAGGAATCAGAGTCAAATCATTAACTAGTG
chr2:50211682-50211700
AAATACTAAGGAAATATCGTCATAATGAAG50211682GTTAAAGTTTAGAGATAACTAAAAACAACAGTATAGTATATTCTGTAGG
chr2:51957448-51957466
TGAAATATAAATTTTGTTACATTTTAGTCA51957448GATAAAGTTAAGAGATAATAAAGTGCTATACATTTAGCTATATACCATG
chr2:54499886-54499904
ACAGAGTTTTGGCTAACTTTTCCAGTGTTT54499886GTTAAAGTTGAAAAAGCATTGCAGCTGTTATGCTGGGTACTTTCCAATG
chr2:58375683-58375701
AAAATCTTAATCAGGGAACTGGGGCTTCTA58375683GTTAAAGTAGACAGATGATGAACAAGTACCTAAATAATATATAAAATGA
chr2:58456591-58456609
GGGAAGGAAGATTATTTCAGTTTTGGACTT58456591GTTAAATTTGAGATATCTTTTAAATATCCAAGTGGTGTTGGAATCATTG
chr2:74992641-74992659
CTTTACCAACATTTATTTGCCATCCTAGAA74992641ATTAAAACTGAGAGATCATTAAAATATTTATTAATTTCAAAATAATAAA
chr2:79602107-79602125
TCTGCTGAATGTGTACCACTTTTGCACCGT79602107CTTAAAGTTGAAAGATCGTAAGTTGAACCATCCTAAGCCAGAGACCATC
chr2:81875317-81875335
TTTGGAAAGAGCTGGGAAGTAAATGTCCAG81875317GAGAAAGTTGAGAGACCATAGAAAAAGTAGGTAGAAAGGCCTATGAAAA
chr2:88145916-88145934
CAGCATCCAAAATCCAGATCATCCATGAAT88145916GTCAAAGTTGACAGATCTTTGAGGACATTAATTCTAAGAAATTATAACT
chr2:129944985-129945003
GTGATATTGCTGCATCCCATTACTGGAGAC129944985GTTAACTTTGAGAGATGATGTAGCAAAGATTTCTCCATTGTAAAATCCT
chr2:134082712-134082730
CATATACAATGTTCTGCATCTTGCTTTTTT134082712GTTATATTTTAGAGATCATTCCATATTATCTCCAATGAACTCTTTATGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/hg38/3/-/nogap/ATGATCTCTCAACTTTAAC
lang : en | db : hg38 | k : 3 | strand : - | nogap : true | query_string : ATGATCTCTCAACTTTAAC | format : html | download : | debug : 

0.012 | 0.012 | search_start;
4.918 | 4.907 | search_minus_done; http://172.18.8.138:28017/match?q=GTTAAAGTTGAGAGATCAT&k=3&no_gap=1&offset=0&limit=50
4.931 | 0.013 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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