GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 19:22:02, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:4963540-4963558
TGGTTTCTAGAGAATGGTGACAGGAAATTA4963540GTCAAGGATGGCACCTCATTGCCTCAGACCACAAATAATTGCTTCTAAC
chr1:27325945-27325963
TACTAAGTACTTGGCACATAGTAGAGATCC27325945GTAAATGATGGAACCAATTTGCCCAGCCCTGGAGAGGCCGCCAGGACAG
chr1:37702029-37702047
TGGGATTCTTGCTAAAACTAGGTTCTGCAG37702029GCTAAGGATGAAACCTAATTGAGAAGAAGGCTTAAAGGAGCCTGACTAA
chr1:65095469-65095487
GTTTTGAGTTTCAGAATTCTTTGTTGAAAT65095469GTAAATGATGGTACCTTATCTATAGTGCAGCCCTTGAACATAACTTTAT
chr1:68102951-68102969
TTTAAGAGGTAATTAAGGTTAAATGAGATC68102951GTAAGGGTTGGATCCTAATCCAATAGGACTGGTAGCCTTTTTAAAAAAA
chr1:74299914-74299932
ATATGGATAGTGAATGTAAAGTGTCATTAA74299914GTAGAGGATGGAACCTGAATAAGAAGGATTTGGTAGGTAGTCATGGGAA
chr1:76682210-76682228
ATTTCCTATTCAGGCCTGGACAAACATCCT76682210GTAAAGAATGCCACCTAATTTGTATCTTTGAAGGATGAATCCAATAATA
chr1:82686397-82686415
GATCCTGGAAAATGCAAGGCTCAGTAGGGT82686397GAAAAGGATGGAAGTTAATCACATGACACAGGAAAACCACAGCTTGGAG
chr1:90119129-90119147
ACAATGGTAAAGAGTAGACTAACTGTAAGA90119129GACAAGGATGGAACCTATTATAATAAAACAAATGAGACATGCTGGTGCC
chr1:106518810-106518828
TGTGGCAGTGACTTTGGAACTGGGTAACAG106518810GTAAAGGATGGAACAGATTGGGGGCTCAGAAGAAAACAGGAAGATGTGG
chr1:110516703-110516721
ATATCCTGTTCATGTACCAATGCTTTATTT110516703TTAAAGGATGGAACTTAAGAAATGACAAGGATTCTGCAAACATCCCATA
chr1:158657329-158657347
AGTTTCATTATATTCAAGTCAAATTTAGTA158657329GTAAAGGCAGGAACATAATTTTAGAGACTGCACTATAACACATGCACTG
chr1:164714563-164714581
TCATCGCAGACTGTGTATTAAAAGTCCTTT164714563GTAAAGGATGGAGCCCTATACAAGTGATATTTCATCTATATAACTGTTA
chr1:167560900-167560918
CCAGACTAGTTCCTGAACAGACAGAAGGAT167560900GTAAAGGATGGAAACTATAGCTAGGTCCTGGTCTGGAAAACAAGCTCTG
chr1:172730359-172730377
AACAAAGGGAGAAGTTAATTACCCTGTGTA172730359GTAAAGTATGGAGACTAATATACATGGGCAGCCTCTCTCACAGGTTCAG
chr1:181145189-181145207
CCAGGACAGGAGCATACTGGGCATTTTCAA181145189GGACAGGATGGAACCCAATGTGGCTGGTGTGGAGTGAGAGGTGGGGAAG
chr1:183132196-183132214
TCAAAGTGAGGCAGTAAGTTGTGGGTGTGT183132196GTGAAGGATGGATTCTAATGACTAACCATGGAATTTAAAATGGGTTAGG
chr1:183778336-183778354
TTACGTGTCTGTAATGCTTATTCCAGATGC183778336CTAAAAGATGGAACATAATTTTTGTATTTTCTAGTATTCAGATCTCAAA
chr1:186111456-186111474
ATACTGGCCTCTAGTTCCATCCCTGTTCCT186111456GCAAAGGATGGGACCTCATTCTTTTTTATGGCTGCATAGTATTCCATGG
chr1:192469006-192469024
TGGTTAACATATATAATTAGTTGACTTTGA192469006GTAAAGGAGGCAACCTACTCTAATGTGCATCTCCTTCAGCCAATCCTTG
chr1:193570360-193570378
AGACAAAGGTTAAAAGCTCTCTTAATGTAA193570360GTAAAGGATACAACTTAATGCACAGTGTTAGTACCACTCACTCCCAGCT
chr1:203485298-203485316
ATTAAACAAAGCAACCGACAAGTAACATCA203485298GTACAGGAAGGCACCTAATATGAAATGAGCGAACGCTAAAGGGATGCCA
chr1:205137366-205137384
CATCAGTAACTGGAAACAGATTAAGAAGCA205137366GTAAAGGATGGAAATTAAGAATATGGGCTCAGGAATCAGACTGTCTGGA
chr1:219335832-219335850
ATTTTGGTAGTCTAAATCATGTGCAGATTA219335832GTAAATAATGGAACCAAATAAGGAAATTCTGGTTGTACCTTTTAAAATG
chr2:3025505-3025523
CCAAAGGAAGCTGATGAACAATCTGCAGGA3025505CTAAAGGAAGGAACCTAATTCCAAGAGGAAAGTTTCCAGGAGGAGCATG
chr2:14282966-14282984
TTATGTATATAATACATTTAAACATTTTTT14282966GTAAAGTATGGAATATAATTGAATTGGTTGGTTGCTCCTAATGTAGTTG
chr2:34776889-34776907
CCTCTATTTTATTTCCATAGGTCGTGTGAC34776889CAAAAGGATGGAAGCTAATGATGCAGGTAATACAGTATGGATGATGATT
chr2:37364930-37364948
TGAGGAAAGACAGAAGTGACGTGTGGAAGG37364930GTAAGGAATGGAACTTAATTTTAAAAAAAGTCAAAAAGCTGCCGAGCCG
chr2:48895339-48895357
TCACTTACTATAACCTTTATATTTCTGATT48895339GTAAAGGATGGAAAGTCATCCTTTCCATTTGCTTGGGCTACATTTCTAT
chr2:49779342-49779360
AGGGTATTATAATACAATGAGCTACCATAA49779342GTAAACCAAGGAACCTAATTCAGTGACAAAACAAAGACTTTTCATGACT
chr2:50126399-50126417
GTTTGGAATAAGTGTATGTTCACTCTTCTA50126399GTAAAAGATTGAACCTAGTGTTTTACATTACCAAGAAGTACCATTCACT
chr2:52387536-52387554
AAAAAGATCTCCAGTTCCATCCATGTCATT52387536GTAAAGAATGGAATCTCATTCTTTTGTTGTGGTTGAATAGTCTTACATT
chr2:56255960-56255978
CAGAAGTTGCTACATTTCCATAGGGAGATT56255960GTAAAGGATGGAACATATTATATCCAAGCTCATTCTAGCTATACTATAT
chr2:73665812-73665830
AAGGAGCATGGGTAGAGAGAAAAGCAAAAT73665812GTCAAGGATGGTACCTCATGGAATACAATAGCAGAAAGAGGCCAATAGA
chr2:84805913-84805931
AAATCCCACCTTGAATTGTAATCCCCAGGT84805913GTAAAGGGAGGAACCTGATAGAAAGTGATTGGATTATGGGGGTGGTTTC
chr2:96261845-96261863
GAAGGTCTTGCTTAACTCATCATCCTGTTT96261845GTAAAGGATGGAAAATAAAAGAAGGAATGAGGAGGATGAAGTTGTAGGC
chr2:133760393-133760411
TGGGTAGATATTTGATAAATTCTTTGTGGA133760393GTGAATGATTGAACCTAATGGATTTTTTACCCTTGTTCATTCCCTGCAT
chr2:156646776-156646794
GAATCCAACCCCCCCCAAAAAAAAAAAACC156646776GTAAAGGAAGAAAGCTAATTAATATGCGGTAGTTCTTTGTATTTGGCTT
chr2:199118211-199118229
TTTTCTAGTATCAATTATACTAGAAATCTT199118211GTGAAGAATGTAACCTAATAAATAAGGGGCTGTTGATTTCCCTAACAAT
chr2:210801626-210801644
AATCCCAGTCAACACATTATTTTCTTATGG210801626ATAAACGATGGAACCTTATCCACTACAATAAGGTGAGACACCAGTAGTG
chr2:226172270-226172288
TAACTTACATAGCTTGCCTTAAGGCCCCTG226172270GTTCAGAATGGAACCTAATAATAGGAGAATTCCATCTCCTTTTGTTAGA
chr2:241177866-241177884
GGTTATAAAAGCTTTTCTCCATCTTAGGTT241177866GTAAAGGAAGTAACCTGATTTATTTTCTAATACTTGTGTAACTCCATCT
chr3:14152244-14152262
ATCACCAATTTGTTTTTCCAGTGATAAGTG14152244GAAAAGGATGGAACCTTTTGCCTAACCCAAGTCGAGTTGGGCAGACAGT
chr3:23755579-23755597
AAAACTGTAAAGGGTGGGATACAAGGAGAG23755579GTAGAGAATGGAACCAAATAATCTCTCACACTGGGAAAAGACCACTGTG
chr3:28358801-28358819
TGTAAACTCATCTCTATATTTGCTATATTT28358801GTAAATGATGAAACATAATCAATATTGATTTTTTTTCTTAAGTTAATAA
chr3:41133096-41133114
TCCTTTCTCTGGTCCTCAGTTTCTTAATCT41133096GTAAAGCATGGAGCCTAAGCAGGCCTCTCTAGACCATACATGATATGCT
chr3:52696929-52696947
AGAAAGACAACTTAAAGGATAAGATTTGAT52696929TTAAAGGATAGAAGCTAATGACGGTTCTGATGTTATTAATACTTGTGGT
chr3:60970323-60970341
CCCCTTTCCCTTAGAGTAGTAAGTTCCAAA60970323CTAAAGGATAGAACCCAATAGTGGGTCTTGACATCAACTTAGGAAATTG
chr3:61925064-61925082
AGTAAATATGCACAGGGCTCATAAAAAGTC61925064GTAAGTGATGGAACCTAAAGAAAAAGCCAGTGCTTAATAAAATCGCAGT
chr3:61932988-61933006
TTGACAACAATTTATGAAACCAGTTACAAT61932988GTAAAGGATGGTACTTAATTTATACCTGAGAAATTATACATACAAAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/ATTAGGTTCCATCCTTTAC
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : ATTAGGTTCCATCCTTTAC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
5.501 | 5.490 | search_minus_done; http://172.18.8.78:28018/match?q=GTAAAGGATGGAACCTAAT&k=3&no_gap=1&offset=0&limit=50
5.513 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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