GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-19 10:53:25, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:13553996-13554014
CCAGATGGTGGTGGCAGTTTTCCAATCTGA13553996GATTATTGGAGTATAAACCCCTAGGCTCCTCCAGCAACTCAGATAGGGA
chr1:13778231-13778249
CCAGATGGTGGTGGCAGTTTTCCAATCTGA13778231GATTATTGGAGTATAAACCCCTAGGCTCCTCCAGCAACTCAGATAGGGA
chr1:14742803-14742821
ATGTCTACAGAACAGGACTTGGCACTGATG14742803GATTGTTTGGGTATAAAATATTACGGAATGTCACTAGAGAGTGACTTCT
chr1:21273160-21273178
TACATTGTCCCTTTTAATTCTCACAACCAC21273160GATTGTTGGGGTAGAAATTATTTGCCTATTTTACATATGAGGAAACTGA
chr1:22139431-22139449
ATAATAGGCCCTTGCCCCTTAAGGGACTAT22139431GATTATTGGCATATAAGATGAGATAAGTCATGCAAGGCACTTCATAATA
chr1:24369004-24369022
GCGTGCTGGAAAATGTCACATAAGCTGTGT24369004AATTAATGGGGTGTAAAATGAAGATGCTCTGTAATCAATATGGCTCCTT
chr1:27203254-27203272
TGCTGCCAGTGGAAGGTAGACAGAAGCTAC27203254GTTTATTGGGGAAGAAAATACCCTTGCTGTCAAACCATGGCCTGAAAAT
chr1:33007581-33007599
TTGACTTACGATTTTTTGACTTTACAGTGC33007581GTTTAATGGGGTATTAAATGCATTTTAAACTTACAATGTTTTCAACTTA
chr1:35989967-35989985
GTTCCCTCAAGAATGTCACATAAGCTATAC35989967AATTATCGGGGTATAAAAAAGAAATGTTTCATAACCAAACATTGTCCAA
chr1:38319500-38319518
TCACATTTACCACACTGTGTTTGCTGCTAT38319500GATTATTGGTGTAAACAATTTCTGCTTCTATGCTATAAATCGACTACCA
chr1:48535079-48535097
CTGGGGTTTACAAGAAAGAAGAAACACGAA48535079GAGCATTGGGGAATAAAATGAGCCTTGTCAGCCACCCTCATCACTGACA
chr1:50594938-50594956
CCTCTGGAAGTGCATTCTGTCAGTTTAGCT50594938GCTTATTGGGGTATACAGTAAGAAAGGAGCAGTCCAAGTGGAGGATGGA
chr1:51023227-51023245
GGTGGTATATTTGGCAGATTAGAACATTAA51023227GATTGTTGGGCTTTAAAATATCTTTTAGCATCTATGCAGACTGACAAGC
chr1:54600738-54600756
TCCTGCTCCCATCTGAGAACTTGTGCCCTG54600738GATTTTTGGGATATAGAATCAGGACACTGGGGAAAGAAAGACTCCTGAG
chr1:57496900-57496918
TTGAGTTAATTAAATTTTATAGAAAAAGGG57496900GATTCTTGGGCCATAAAATTAAAAATAATCCTAATAACCATATGTGGTC
chr1:57551704-57551722
ATGTTATATAGGCAACTGCAATCAGTATGG57551704GATTATTAGGCAATAAAATGCTGGGCAGTGAGTGACAGTCTTTGAAGGT
chr1:57652077-57652095
TTATTTATTCTCACTTCTCTGGCAGATAAG57652077GATTATAGGGATATAAAAAGCAGAGTGTGCTATAAAACATTATTTATTA
chr1:57716037-57716055
TTTCAATATCTTTGTATGTATTCAGGTTAT57716037AATTATTGAGGAATAAAATATATAAAAGTAAAATACTGGTGTACCTACG
chr1:61921943-61921961
TTTTTCTAGTCCTTTCACCCCAGGACTCTA61921943AATTATTGGGGTAAAAAACAGCCTTGCAAGAAAAAGGGGAGCTATTTTT
chr1:66683079-66683097
GCTAGGCCTGAAGAAGCAGGAGGAAGAAAT66683079GATTAATGTGGCATAAAATGCAGCAGCCACAAGAGCTGCAGTGTCAAGC
chr1:70103253-70103271
TTTCTACCTAAAATTTTGGAAAATTGACTG70103253GATTTTTGGGGAATTAAATGAGGTAATTTATTTAAAAGTCAAATAGTAT
chr1:70936727-70936745
GAGACTTTAACATCCCCTCTGACAGTATTA70936727GATCATTGAGGTAGAAAATTAACAAAGATATTCAGGACCTGAACTCAGC
chr1:71816333-71816351
TTTTGAAGATAGACATAGTACTTACATTCT71816333GAATATTGGTATATAAAATGATCTTTCAAAAAAGTAATTAGACAATATC
chr1:78513784-78513802
TCCTGGACTTAAGATTTTTCCACTTTATGG78513784GTTTATTGGGGTATTAAATGCATTTTTGACTTATGATATTTTTGACTCA
chr1:79489084-79489102
TTCTTATAAATACTATTCAATGACATGGAA79489084GATTATTAGGGTATAATTTTAAGTAAAGAACAGAAAGATACAAATTACA
chr1:80728964-80728982
TTCAACTCCCCAGTGACAACATTCAGGACA80728964GATCATTGAGGTAGAAAATTAACAAAGAAATTCTGGGTTTAAACTCGAC
chr1:89748054-89748072
TATCATCTGGTCTCAAAAATGAAAAGATGC89748054AATTATTTGGATATAAAATCAAAACAGGTACTGAATGAGAAGAATGAAT
chr1:90660325-90660343
ACATATATGTGTACACACACACATACATGT90660325GATTGTTGGGGTACAAAGTCTGAAATTTGTAGGTCAGGCTAATAGCTGG
chr1:91197924-91197942
GACAGAAGGAGGCATCATCCTCTTGCCAAT91197924GATTATTGGAGCATAGAATAAAATCTTTATTGTGCTTCACTGAGGTGTG
chr1:96046533-96046551
GGCAGATGTTAAATATGCATCTTAAGAAAG96046533GATCATTGGGGTTTATAATAGTATTGACCGCACTCCAGTTTTATTTTCT
chr1:96614762-96614780
TTCCCTCCCCCAGGGTATGGCCCTCCACTT96614762CATTTTTGGGGTATAACATCTTTATAGGACACAAGTAAAGTCCCAATAC
chr1:97505297-97505315
TTGCACTCTTGATTTGGGTCTCAGCTTGGA97505297CATTATTGGTGTATAAAAATGCTACTGATTTTTGTACATTGATTTTGTA
chr1:100343568-100343586
TAATTCTAACAATCTTTTGCAGTTGTTATG100343568GAATACTGGGCTATAAAATATTTAACTAGCTAATTTTAAAATTTTAATT
chr1:101055612-101055630
GAAAAAATATCCCCAGTCCTGTTAGATAAG101055612GATTATTGGGTTATAATTTTACCAAGAAAGGGAAGGCACATTTTCCACA
chr1:108506014-108506032
GGGTACCGAGAGGTAGCAATCACCATGCAT108506014GTTTATGGGGGTATAAAATAATTTACCTCACTTTTAAATACGTATGGCT
chr1:108666461-108666479
TTTGATTTACGATTTTCAGCTTCATGATTG108666461GTTTATTGGGGTATTAAATGCGTTTTTGGCTTATGCTATTTTCGACTTA
chr1:109381128-109381146
TACTCTGAGGAAAACTTCTAGTCTTAAATG109381128CATTATTGGGGGAAAAAATCAAAAATCAATCAACTATTTAAAATAGGAA
chr1:116794536-116794554
TAGAAATATTTACCTGCCCTATCTCACAGA116794536GCTTATTGGAGGATAAAATTAAATTAAATACATCAGTGTTTTGAATTTT
chr1:119788780-119788798
CACCACCAACCCCCTTGAATTCTCCAGACT119788780GATTATTGTGGTAAAATATCACACATTTTCTCAATCTGTATGCAAACCA
chr1:154423059-154423077
CCACAATACAAATGAATGTGCTGCAAACAA154423059GATTATTGGAGTCTGAAATGGAATACCTGTTGAGGGAAATCTTTATTTT
chr1:156705400-156705418
ATATATATATGCACATATGTTCATGAAAAC156705400GCATATTGGGGTAGAAAATAAAGCAAAGTTGGAACTGAATTAGGAACAA
chr1:161815894-161815912
GCACCATCCAGGAGGCCTTCTTATTTCAGT161815894TATTATTGGAGTTTAAAATTTGTTTTTAGGTGTGTCGTATTTATTTCTA
chr1:181530431-181530449
ATCTTAATACTGACATTTTTTTGAAGTTGG181530431GTTTATTGGGGTATAATTTGCATTTAGCAAAATCCATTCTTCTTAGATA
chr1:182895533-182895551
TCAGGAAAAATCTGGCAAAAATGATGGCTA182895533TATTATTGGGATATAAACTGCAAAATAGTAATAATAATATCAGTTGACA
chr1:183027941-183027959
ACTTGGTTTCCCTGGAGCATGAAAGAAGGT183027941GATTAATGGGGTAGAAAAAAATTCACAAAAAGCCACCAACAAAAAGCTA
chr1:189018936-189018954
AGTTCCAGGAGCATTTTAGTGGAGTCTTAG189018936GGTTTTTTGGGTATAAAATCATATAATCAGGTAAAGAGTTTAATTTCAT
chr1:194310274-194310292
TTGACTTTATTAATCAATTTCTGTGTTTCA194310274GATTTTGGGGATATAAAATTAAGAAAGTAATAATGTCCACCCCATTAAT
chr1:195568056-195568074
GAAGTATATAATGGAGATGCTTCACTGTGT195568056AATTATTGGAGTATATAATTGGAGATGCTTCAAGATCAGTATTGTTCCC
chr1:199073568-199073586
TAACTAAGGGTGTAGCTTGTTCTTTTTCTA199073568GTTTATTGGGGCATAAAGTTAGGTTGTTTACTTTGAATCTGTAATTTTA
chr1:203304947-203304965
TCTGATGAACACTTGTGGAGAAAATGTGGG203304947GATTATTGGGGTAGAATACAAGGACAAAGCTGCCGATTCTCTATTTCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/ATTTTATACCCCAATAATC
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : ATTTTATACCCCAATAATC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.230 | 7.220 | search_minus_done; http://172.18.8.78:28018/match?q=GATTATTGGGGTATAAAAT&k=3&no_gap=1&offset=0&limit=50
7.241 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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