GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-04 23:01:58, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:5192817-5192835
TCCTGGAAATTGGCTACGTAGGAAGCAGCC5192817CTCAGTTCCAGACTCCATGTGAATGAAGCCAGACAGTAAGAGCCCTCAA
chr1:36456926-36456944
AAAAACAAAAACAGTAATGGCTGCAGGAAT36456926CTCAGTGACAGTCTTCATGAGATCTGTCTCTTGATTCTCACTGTTTCAG
chr1:39254233-39254251
GCTGACAGGGGCTTCAAGCAGAACTAATGG39254233CTCAGTTACATACCTCATTAGCCGAGTGGGATTTTACCCTTTTCCTTAT
chr1:41115727-41115745
TCAGGGCACCACATGGGCCCTAGATACATT41115727CTCAGTCACAGTCCTCATGGCAGTGCAGGGGATGGGGTGGTCGGACTCA
chr1:44687521-44687539
GGGCCGGCAGGAAGCCTGGTCTCGATGCTT44687521CTCAGTTCCATAATTCATGCTGGAAATTGGCCGGCATGTCCCGCCCCAG
chr1:55258623-55258641
TGCTGTGAAACCTCTTATGGCTGCAAGGAA55258623TTCAGTTACAGAGTTTATGACTCCCAGAGGCAAGATGTTTGGAGGCAGC
chr1:59158978-59158996
TCCAAAACTCACCACTAACTCTCCTTTTTC59158978CTCAGTTACAATCTCCATGATCCTACTCATTTTCAACGCTCCAAGTTAA
chr1:70772240-70772258
AACAAGGGTAGCAGAGTCAATATGATGCCA70772240CTCAGGTACAGACTGCATATTATAGATGAGTAAACAATAACCCTATGGT
chr1:77093898-77093916
TGTTTTAATCATAATGTCAAAATGGTAACT77093898CTCAGCCACAGTCTTCATGAACAAATATTTCTTCCCTAACTATAAGCAT
chr1:81064781-81064799
AATATCGGAAAACACTTTTGTAGTCATTGG81064781CTTAGGTAAAGACTTCATGACCAAGAACCTAAAAGCAAATGCAACAAAA
chr1:84216841-84216859
CTTTCACTAAATGATGTTTGAGTGCAGGGG84216841ATAAGTTACAGTCTTCATGATTGGGGATGGAGAGGCCCTTGGTCTCATG
chr1:95050785-95050803
ATGGTACCTCTATGTTCAGGCTAACTTGGT95050785CTCAGTGTCAGCCTTCATGGACAGCTTGGATGATACAGGCAAGGTGGTA
chr1:103406993-103407011
TTCTTAGGTCAATTTACTTGTTTACTTTTC103406993CTCAGATAAAGACTTCATGGCTTAGGGCAGCCTACCATGATCTAGCTCC
chr1:108638355-108638373
TGAAGGTTTATCTACACAGGACTTGGGGCT108638355CTGAGTTATAAACTTCATGAAGGCATAGGCCATAGCACCATTGTGCACT
chr1:113684946-113684964
TTTTAGCTGTGAGGTTTCAACATTTTCCCA113684946CTCAGTTACAGCTTTCTTGAGGCCTAAAGAAGACAGGAAGCAACTTGAA
chr1:114255735-114255753
ATAACAAGTCCAGTACTATAAATTTTAAGA114255735CTAAGTTCCAGTCTTCATGTGGTATCTTCTTTTCATATCCTGTGGTTTT
chr1:148634286-148634304
AATACATAGCTCAATCATCTATCCAAACTT148634286CTCTTTTACAGACTCCATGCCAATTAACCTTCTCCTATGAAACTATTAT
chr1:148796315-148796333
AATACATAGCTCAATCATCTATCCAAACTT148796315CTCTTTTACAGACTCCATGCCAATTAACCTTCTCCTATGAAACTATTAT
chr1:149542743-149542761
AATATATAGCTCGATCATCTATCCAAACTT149542743CTCTTTTACAGACTCCATGCCAATTAACCTTCTCCTATGAAACTATTAT
chr1:152341260-152341278
TATTGCTTCCTTATCTCTTTTCAGTCTATA152341260CTCAGTTATTGCCTTCATGATTCTCTGGCCAAGATGGAGTAACGTGGAT
chr1:170642234-170642252
TTTCTTTTCTGCTAATTCATTTTATAATAG170642234CTAAGTTAGAGACTTCTTGGAGATTTAGGTTTTGGGGACTGGATATCAT
chr1:172191098-172191116
CATAGAATAGAGTTTATCACATAGTAAGCC172191098CTCAGTAACAGAGTTCAAGTCTTAATCATCAAGTAGCTGAGGAATTCTA
chr1:176929200-176929218
CATACACACACACACTCACAAACACAAACA176929200CACAGTTACACACTTCATCTGGTAAGATTAAGGAGCCCATTCAGGGCTG
chr1:178478341-178478359
TAGCTGGGACCACAGGCGTGCACCACCAAA178478341CCCAGCTACTGACTTCATGGATTTTGGACCTTGTAAGCTACCTCCCTTT
chr1:180341469-180341487
GTCCTATTTATCTTTGCTGAAGTAGATTAA180341469ATAAGTTACAGACATCATGACATCTTGTCTCTAAATATATCAGTATGCA
chr1:200220727-200220745
TATCCTGTAACTATGGGCCATCCAGTTTGG200220727GTCAGATACAGACTTCATAGTACCCCTCCCTCCTCTTACAGAGAACACA
chr1:200714754-200714772
TTTGTGATACTGAAATTTGTATCTTAACCT200714754CTGAGTTACAGTCTTCCTGGATTTTTAGTAGAGATTGGGGTTTTGCCAT
chr1:201822242-201822260
AGGAGCTGGAAAAGGTAAGCAGGTCTTTGG201822242ATCAATAACAGACTTCATGCTTAAAAGTTTTATTCATGCAGAGCAGTGA
chr1:202518384-202518402
CACACATAATAGTGTCATTTTTCATGACCA202518384CCCAGTTTCAGACTTCAAGCTGATGTATCCACTAAGCTTGTTCCTTCCA
chr1:213476114-213476132
ATGTGTCACTCAGATCAAGGCTGGGAGAAA213476114CTCAGGGACAGACTCCATGTGACATGCTTCTTGGTGCTTGGCACACTGT
chr1:215152085-215152103
GCTTGGGGATATGGTGGTTGATGAAAGAGT215152085CTCAGTTTCTGACATCATGTGTCTTAGCAGGAAAGATTACAGCTCCAAA
chr1:219233805-219233823
GTTGGAAGATATTCCCCTCCCCTTGCTTGT219233805CTAAGTTACAGACTTTATTAGAGAGAGTATGACTACTACAAGCAACTAC
chr1:238023268-238023286
TCAGGGTTATTTAAGCATCCCCCTCCCATT238023268GCCAATTACAGACTTCATGGGAAATTAGAGTTGCCATATTCTAGTTTAC
chr2:8956845-8956863
TTCACTCTCGGCTGTCATATCCGTCTTTGC8956845CTCAGTTACTGACATCATTATCTTCTCTCCCTAAACTTTCACTGCAACG
chr2:16754156-16754174
ACTTCTGGCTAGCATATCACTTACTCTCTG16754156CTCTGTTACAGACTTCTTCCCTACTACCTGCACTACTGTCTCTTCCATG
chr2:46574889-46574907
ACTCCAAAGTTCACAAGACATTTGCTTTTT46574889CTCAGTTACATTCTTCAAGAAACCATTTCCTATGCGTCCTGACCAGAAA
chr2:48463991-48464009
TGCTGGTTGGGGGACAGTATGAATTATAAA48463991CTCAGTTACAGAGTTTATGTTACACAATTATGTAACATAATTGTGAGCA
chr2:49117522-49117540
TGCTGAACCAGCAAGGGCATGCTCCCATTC49117522CTCAGTTACAGGCTGCTTGGTACATATAGTGCTGGGTTGGTGTGGAGAC
chr2:64047007-64047025
CCTTTTCCTCTTAGACAGGGGTCAGCCTTC64047007CTGAGCTACAGACTTCATATGTCGCTCATTTACCCTCTCCTATGAGAGC
chr2:64743442-64743460
GGTTTTGCATGTGCTTTATGCACTTTTCTA64743442TTCAGTTACAGACATCATGACATTTTGGCCATCTGCAAAAACTAAGGAC
chr2:65279947-65279965
ACTCCAAGGCAATTTTCAGTGAGAATGACA65279947CTAAGTTTCAGACTTCAGGGCAATAGGAATGATGTCAGACTTCAATTAC
chr2:66238726-66238744
CTCCAACCATGGTGAGAACTTATGCATGGT66238726CTCAGTTAATGACTTGATGATAGTTCCTGGGAGGTAATTCAGGGTGTGA
chr2:69092040-69092058
CCAGTACTCATGGCCTTGCTTTCCTATTGT69092040CTCAGGAACAGATTTCATGCTGGTTTCTTCTGTTTTCCTGCCTTGACCA
chr2:76459037-76459055
AATGATTTTTCCTTTGAATATTTTGTGTAA76459037CTCAGTTATAAACTTAATGGATCTACTATTTATAGAATGGAGATTGAAT
chr2:82800197-82800215
TATGCATTTTTCAGTTCAGCCAATGTATTT82800197CTCAGTTCCAGACTTTCTGTTTCATTTTTTAAAAATTATTCTCTTTGTT
chr2:83630078-83630096
TAACATAAGAAAAACCCTTCTAGACATTGC83630078CTTAGGTAAAGACTTCATGACCAAGAATCCCAAAGCAAATGAAACAAAA
chr2:102425586-102425604
CAGGTGGTGAATTCCTTAATCTTGTTTAGT102425586CTCAACTACATACTTCATGTAACTTTTTTCTAGTCACCACTTCATGGTA
chr2:117237223-117237241
CTATTTCTTCAGTGAAATCTCAGCACATCT117237223CTCATTTACAGACATGATGTGATCTATTCTTCCTCCCTCTATAACATTA
chr2:127315650-127315668
CCTCTCCTCATTGGATAATTCAGCTCCTTG127315650CTTAGTTACAGACTTCATGCAGGCTGCCATGTCATCATATTGCTCAGCC
chr2:134871546-134871564
GCTTATACCTTGAGTTTGAAAGATAGCTGT134871546TACAGTTCCAGACTTCATGACCTCATTCAAAGGCAGCAAGTCCAGGGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/CATGAAGTCTGTAACTGAG
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : CATGAAGTCTGTAACTGAG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.433 | 6.423 | search_minus_done; http://172.18.8.78:28018/match?q=CTCAGTTACAGACTTCATG&k=3&no_gap=1&offset=0&limit=50
6.445 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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