GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 15:55:52, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:7861431-7861449
GTCTAAATTTTTAATATAAATATTTTGCAT7861431ATTATAAAGTGATTACAAGTTGTATTTGATTTCTAAACAGTATGCTTTA
chr1:13417115-13417133
ATTTGGACCATTTTTAGGAAAGTATGGCTT13417115TTTATTAAGTGACAACATGGGGATGAGATTTGCTTTCTCCGTTAAGTTG
chr1:13637912-13637930
ATTTGGACCATTTTTAGGAAAGTATGGCTT13637912TTTATTAAGTGACAACATGGGGATGAGATTTGCTTTCTCCGTTAAGTTG
chr1:13891337-13891355
GAACTCATTGGCTTAACTCGGGCCCTCACT13891337CTTGCAAAGGGACTACATGTCAATATTTATACTGACTCTAAATATGCCT
chr1:17875867-17875885
GTGGAGGAGACAAAAATCAAACACATCAAA17875867TTTATAAAGTAACCACATGTTATGCATTAAGTCCTGTGAAGGAAACAGA
chr1:34070470-34070488
GGGGAAGATGAAGAGGGGAGCAAGAGAGTT34070470CTTATAAAGAGGCTTCATGCTCTTCTCCCTTTGGGCAGGTGCCTGGATT
chr1:51164115-51164133
GTCTCTGTGAAACCAAAGAATCAGCCCCAT51164115CTAAGTAAGTGACTACATGGTCATGATCAATCCACTTCTGCTAACTGAG
chr1:60665371-60665389
TGTCCATGTGCATGCAATGTTTAGCTCCCA60665371CTTATGAAGTGAGAACATGTGGTATTTGTATTTGGTTTTCTGTTCCTGC
chr1:62358771-62358789
AATTTGGGTTAAAAGGTACATATGTTCATC62358771AGTATAAAGTGACTACATTAATTTGTTTAATTGCTCATCTCCTGTGACT
chr1:72698738-72698756
TCCTATTTTTTCACTCAATTTTAGCAAGCA72698738CTTATAATCTGACTACATACAGAAAAATGTAAATACACTGAAATACAGA
chr1:77596558-77596576
CAGATACAAACCTCTCCACATCTGTAGTCA77596558CATATAAAATGACTACATACTCCACAGCTGCTTTGAGGATTAAACAAGT
chr1:78853232-78853250
GTAAAATCCAAGTTTTTGCGCTCTTAGGAT78853232CTTATAAAGAATCTACATGCTGAGCAGATGTGGAAAGTTCTGGAACATT
chr1:91736335-91736353
ACAGTTGAAAACAGTTCACTGAATTCAGAA91736335CTTAGAAAGTCACTAAATGGCCTGAACAAAAACAGCTTCAAAGGACTGA
chr1:95661623-95661641
AGTTTAAAGTGGAGCTCAGACAAATCATGA95661623CTTATTAAGAGACTACAGGAAGCCATTCAGCATTTAATAATAACTGTTT
chr1:103539575-103539593
AATGGTGTCAGAATTCAGGTCATTTGTTCT103539575TTTAAAAAGTGACTAAATGAAAGTTAAAGCATAAGTTGTCATATCCAAT
chr1:105830998-105831016
ATGTATTTAAATGCTATCATTATTTTTGTT105830998CTTAAAAAGTAACTACATATACTCATATTACTGGGAAATATGTCATATG
chr1:115160237-115160255
CGTAAGCCACCACACCTGGCCAGGATAATA115160237CTTATTAAATGACTACAAGTTGAGTACCACATACCTTCAGTCAAAAAAA
chr1:115205738-115205756
AATCCTTCAGTCTTATAATTTGCTATACTG115205738CTTATAAAGTGAAGACATTATCATGTTTTCTTTTCTTTAGGATAAAACT
chr1:116120334-116120352
TATCCAGGTAAGTCATATTTGCCATTCTGG116120334CTTTCAAAGTGACTACATCTAACCACTGTACTGGAACCACACACTTCTG
chr1:116703924-116703942
TACCTATGGGTATATTTTTCTGTTTTCCTA116703924CATATAAAGTGGCTACAAGCACTTGAGTAAGGGTTTAGATGAATGTTTG
chr1:152756010-152756028
TATTTACAAGCTCTCAGGTGCTATGATATG152756010CTGATGAAATGACTACATGCATATCCTTGCTCTAAGCACTGATAAAAGA
chr1:159784807-159784825
AGGAATAGAACCTAGGTTCTAGAAACAAAC159784807CTTAAAAATTGTCTACATGTAATAGATGTTCAAAACAGGGAGTTTTGTT
chr1:164926701-164926719
TCTTTCACTCAGCACGATTATGTTGAGATT164926701CTTCTATAATGACTACATGGATCTATAGTTCATTACTTTTTATATCTGG
chr1:167415151-167415169
GGATTCTTCTCATTTGAACTCTAATTTCTA167415151CTTTTAAAGTGACTTCCTGTGTCTGATGGAGTTAGATTCTTATGAGTGC
chr1:169492712-169492730
TAAAGAGCTAGCACATAAGATCTTAGCAAA169492712CTGATACAATGACTACATGCAATTCATATTTGGGCACAGAGTACCTAAA
chr1:179942792-179942810
CCCATTATTTCCATGACATCATATATTTAG179942792CTTATTATGTGACTACTTGTAGCGCTTTTCTTTGCCCTGTTATCAGCGG
chr1:185562460-185562478
TTATAATTTTTGTGGGTCTTCTGTGTTTAT185562460CTTATACAGTAAATACATGCTGATTAAGGTCTACATGGGTTTTAACTTT
chr1:190031011-190031029
TTTATGTTCACAAATACCCAATGTTTAGAT190031011CCTATAAAGTGAGAACATGTGGTATTTGGTTTTCTGATCCTGCATTAAT
chr1:190986623-190986641
GATGCTGTCATTATTATTTAAAATATTAAG190986623CTTATAAAGTAAGTACATGAAGAAAAAAAAAGCTGCATTTTCTTATTAT
chr1:194419964-194419982
ATGTGTCCATGTGTCATCATTTGGCTCCCA194419964CTTATAAAGTGAGAACATGTGGTATTTGATTTTCTGCTTCTGTGTTAGT
chr1:195974542-195974560
TCCATAATATTATTTGAAAAAATACATATT195974542CTGATAAAGTGACTTCAGGTTGTAGTATTAACTGGCCTAATAGCATTCT
chr1:196472511-196472529
AAAGCTGTTCATCACAAAACTATTTATAAG196472511CTTATAATATGACTACAGGCACCTGCAACCCCACCATAAACCTAATAGC
chr1:196504719-196504737
GCACATTTTTATAACCTTGGTTTTACCAAG196504719GTTATAAAATGACTATATGAAATGTCAGGTTGTTAGGTGCTAAATGAGG
chr1:198892261-198892279
TGACTTCCCCTGAGCTAACATTTGAGACTG198892261ATTATAAAGTGACTACATTGTAACAATTTGATAACACTGTCCTTGGACT
chr1:203162426-203162444
AAAAAAAAAGGTTAGCTATCTCATTAATAA203162426TTTATAGATTGACTACATGTTGAAATGTTAATATTGTGGGTATATTGGG
chr1:204991823-204991841
TGGGCCATGGAGGGCCGTCTAATACATGGA204991823CTTATAAACTGACTGCATGAGCAATGAAAAGGCCAAATTATTCTGAATT
chr1:206572339-206572357
GGTCAGTGGATTTGGAGCTATATTAGTATT206572339TTTTTAAAGTGTCTACATGGTACCAAATATCTGTAAATATATTGCCTGT
chr1:211118782-211118800
GGCACTGAAAGATTAAGTAACTTTCCCAAG211118782ATTATAAAGTGACTAAGTGGCAAAGCCAAATTCAAACCCAAGCCACCTG
chr1:212658126-212658144
TGTGGACTTTTTAAAGAATGCTCACCCCAC212658126CTACTAAAGTGACTCCATGACCCACTTATGGGTCTTGATCCACAGTCTG
chr1:214752631-214752649
GTGTGTAACCTTTCCTGTGGCTAATAAAAG214752631CTTATAAAGTTACTATAAGGTAAGTTTACCTCAGAAGGTAGATTACTAT
chr1:220212716-220212734
GATGGGCTCTCAAAGCTAGACCTCTAGTTC220212716CTTTTAAACAGACTACATGGGGAATCAGTTTGCTGAAAAATTTAAGTCT
chr1:220691159-220691177
CAAGTTATCCAGAAGGTCTAGCTAGGATCA220691159CTGATAAAGTGGCTACATGAAACAACAGATTTTCAATGCGGAAAATATA
chr1:240598453-240598471
AAGAACATTTTTATTGAAAAATTTTTGCCT240598453CTTATAAAGTGAATACATATATTACTACTTCAGTTTATAACTTGCAAGG
chr1:242859350-242859368
CTAGGAATGGATTCTAAGAATCAACAGTCA242859350TTTACAAAGTGACAACATGACAACACATTCTGTACAAATTCACCTGATT
chr2:6065669-6065687
TTTTGGATAAAGGATACTCAACTTTTAATA6065669GTTATTAAATGACTACATGAATGCATCAATGAACGAAATCTTGTGAATT
chr2:6524591-6524609
CTTAAAGATGAGAAACATTCTGATAAATGT6524591ATTATTAAGTGACTACATTCTTGTGCAAACATCATAGAGTACTTCCTCA
chr2:21003578-21003596
CTCAGCCCTAGGGTAACTTTTGGAGTTCTC21003578CTTATAGAGTGACTTCATAGTTTTTCTCTTATCATACCCTAATAATTCT
chr2:27872796-27872814
TTAGCTACTATGAGGGAGGTATTCTTTCTA27872796CTTATAAAGAAACTACATTTTGGGCAGCATGATAGAGCATGCTTCTAGG
chr2:33356973-33356991
AATAACAATAGGCCCGGAGAATCTCCAGTG33356973CTTATAAAGTGACTACTGTAGCTGGGAGGTGAAATGGGAATAATGATTA
chr2:37331892-37331910
CTGACTTTTTGAGAAGCCCAAGTCAATCAT37331892CTTATAGAATGACTACATTCAGGATTTGTCTAATAATTTCCTCATGATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/CATGTAGTCACTTTATAAG
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : CATGTAGTCACTTTATAAG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.697 | 7.687 | search_minus_done; http://172.18.8.78:28018/match?q=CTTATAAAGTGACTACATG&k=3&no_gap=1&offset=0&limit=50
7.709 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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