GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-30 01:13:07, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:163682552-163682570
AACAGGAAGAAAAATCATACATATGACAAG163682552TTATATTAGTGTATCTTAGGAATTTCATTTATTTATTTATTTATTTAAT
chr1:199022744-199022762
ACAATTGCCACTATAAGTAAAAACACATTT199022744TTATAGCAGCATATAGTAGCATAAGTATACACATTTGTTTCTTTTAACT
chr1:237523753-237523771
AAACCTGTCACAGAGATAAAGTGTGAGAAC237523753TTATAGTAGCTTATCGGAATCATTTATTTTTCTTTACCCTTCTAAAGAA
chr2:71846928-71846946
TGGTACTCATTCACCCAGAGCCCCATCCCC71846928TTATCCTAGAGTATCGTAGTGGTCTCTGAACAAGTCTTCCTGCCTTCAG
chr2:81451443-81451461
TATAATAGCAACATATAAATTATGTTCATA81451443TTATAGTATGGTATCATAGAGAACCTTACCAAATCTCTCCCTCTTTCTC
chr2:134005222-134005240
GACCCACTTAAAAATATGAATATGTTTTCT134005222TTATAGAAGCTTATCCTAGGAGCAGAGAAGGCCTTCATTCATTCTGAAA
chr2:194072465-194072483
TAGTAATGTTTCTATTAATAGGCTGCTCAT194072465TTATAGTAGCATATGGCAGGTTTGGTGACAGCCAGGGAACTATTAATTC
chr2:195021915-195021933
ACCAGTTTCCATTTTGACCTTCTGCTCTTT195021915GTATAGTAGCATATCCTAGCCATATTAACTTCCAGAAATGGGACCAGCC
chr3:9483356-9483374
GGGCTGCAAGAGATTTGGCTTTGGACACTC9483356TTATAATAGAGTATCGTGGGAAAGTCATGTTACGACAGCAATTTGAGGT
chr3:17342119-17342137
AAAGAAATCCCTATCAAAAACAGAGGAAAA17342119TTATAGTAGAGTATTGTAACATGCTTACGCTGGCTGAAAAAACAAGGCA
chr3:28862936-28862954
TAGACTGTCTGTCATAGACTGAGAGGTTTA28862936TAATAGTAGCATATCATAGACTGATAGAAATATCATAGACTGAGTAGCT
chr3:188161294-188161312
TGCATTTATTTCTCCTTCAAATGACATATT188161294GTATAGAAGCGTATCGTAAGTTGTAGGTACTTAACAAACATGAAGGACT
chr4:64137289-64137307
ACTTTTGGTGGAGTCTTTAGGATTTTCTAG64137289TTATAGAAGCGTATCAGAGAAGAGAAAGGTTTTGACTTCTTTATTTTCT
chr4:140283885-140283903
ATCATTTGACTCATTTTTAATGTACCGTTT140283885TTATAGTAGGGTATCGGAATGACTAGGGAGAAGTCTTTCTTAGACAGTT
chr4:171024104-171024122
AACTCACTGGTAATAGACAAATACAGAATA171024104TTATAATACCGTATTGTAGTGTGTTAACTACTCATATCTTGAGTAGAAA
chr5:12793558-12793576
ATAATATCCTATCACATGCTCAGTAAAAGT12793558TTATAGTAGCGTATCATTTTCAATCTTTGAAGCATTTTGTCTTTCTATC
chr5:28040989-28041007
AATGAGATAATCCATTCAAAACAATTGATT28040989TAATATTAGCATATCGTAGGCATTATATAAAATGTTGCTAATATTATGT
chr6:85347696-85347714
CTTTATTCTTCCCAGTATTTTGTACTTCCA85347696TTATGGTAGCACATCGTAGGAAGGGTTTTCTTGTATTATAGTAATTTGT
chr6:97566693-97566711
CAAGTCCTGTTCCGGGATAGTGCTGGAGCA97566693TTAAAGTAGCATATAGTAGAGGGAACAGACTTTTAAACAGGTAATTAGA
chr6:116708100-116708118
TAGAGGCATTATTACTATTAGAGAGTAAAC116708100TTATAGTATCTTATCCTAGAAGATATGATATAAGGACATACCAAAAATA
chr7:18416501-18416519
GTGCTATACCATCCAGTTTATGGTATTTTA18416501TTATAGCAGCGTAACTTAGGTGCTATACCATCCAGTTTATGTTATTTTA
chr7:53034182-53034200
ATGATATTTCATCATTGCAATAATTCCATC53034182TTATAGTAGAATCTCGTAGAAAAAAACAGAGGTAATTTTAATGCAGGTG
chr7:69340858-69340876
GAAAGAATGTTGTTATTATTCTTAATATTC69340858TTATAGTAGCGTCTAATAGTACATTAGTAAATAGTTATTCACAAATGGT
chr7:145247179-145247197
TTTCTAGGAATAAATTAGCTGTAGTAGTAT145247179GTATAGTAGCATATGGTAGAATATATTTATATAAGAAACTACTGCTTTC
chr8:16863667-16863685
GAGAAAGATTGTTTTCCTCAGTAGCAGGGG16863667TTAGAGTAGTGTATTGTAGAATTGAACAAATGAATAAATATATTGAAGC
chr8:70769270-70769288
TTCAATAATTACAAGGAAAACATAATAAGT70769270TTACAGTAGCGGATCCTAGCAGACACCACCTTAGCATAGTGATCAAGGT
chr9:77858391-77858409
TGTAAAGTAGTTCGAATGTAGTGTTTTCAT77858391TTATAGTATCCTATCTTAGCTATAAATCACTTTTATTTTTAAATCTTCC
chr9:117617073-117617091
ACTTTTTTTTTTTTTTGCTCTCCTGTACTT117617073TTGTAATAGTGTATCGTAGCTTTTTTCTTTCTTCTCTATTCCCCCTAAG
chr10:24572745-24572763
TTGATATTATCATTTTCTGGATTTTAGTCA24572745TTATAGTAGTGTGTAGTAGTATCACATTGTTGTTTTAATTTGCAATTCC
chr10:82733580-82733598
GCCGTATAGTGAGGCACACTTAGTGTAACT82733580TTATAGAAGCATATCGTAATTTCTGTCTGGCTTTCTTGCTTTTTCATTT
chr11:25583047-25583065
GCAGACCAGTTGACTCACTATGAAATCTAC25583047TTATAGTTGCGTTTCTTAGTGTAGACGGTACCATCTATAAAAGGTGTTT
chr11:92103368-92103386
TACTATAAATAATCTAACTTATAATCTCTA92103368TATTAGTAGCGTATCTTAGAATCCATAATTTCCATCCCTGTGGGCCATT
chr12:66629487-66629505
ATAAAGTGAGATTAAGTGGAAAAGACCAAA66629487TTAAAGTAGCGTATAGTATATAATTATAACTTTGTATAACTACAAATTC
chr12:93167601-93167619
AAAAAATGTTCGGTTTCATTTATATTATCA93167601GTATAGTAGCCTATGGTAGGTAAATTACTCGGGACTTATGAAATGAAAT
chr13:46060846-46060864
TGAATGAAAGGTTGACATTGTCCTTCCACA46060846TTATAGCAGTGTATCTTAGTGTTGTGTCTAGGTTCTTTAAGTCCACAGA
chr13:83391057-83391075
TAAATATCAGTTCCACTTATTGCTATTATT83391057TTATAGTTGCTTATCATAGTTACATGACAATTCTCAAATATTACAAAAT
chr13:90770328-90770346
TTTTTACTTAGCACTTAGGGAAGAATGGAT90770328TTATAGTAGCAAATAGTAGTCACAAATATATACAGTAATGTAGTGTTTC
chr13:97168127-97168145
TCTTTATAGTGGTATATAGTCTAAGATACT97168127TTATAGCAGCGTATAGTATAGTCTAAGATACTATTCAGACTCCCTAAAG
chr14:33928912-33928930
TTTATATCTTGTAAACTCTACCTGCCTCTC33928912TTATAGCAGCATATCGTATTTTGAAGGCAAACATTGTACAAATCTCCCT
chr14:35476055-35476073
ACTCTGTCTTTACAAAGGGGAATAATTGTA35476055TTATAATAGCTTATGGTAGCTTTTACATGAAAATGTCCTTATTTATATA
chr14:73573934-73573952
TATTTTGAAGATTATATTCAAAGAGCATAT73573934TTATTGTAGCGTAGCGTATATATATAGTTTGCATTTTACAGATGCGTCC
chr14:107135355-107135373
ATTATATTATATAATTATAAGTATTAATTT107135355TTAAAGTAGTGTATAGTAGTGGGTAACTAGTGGGAGGAGGTTTGTGTGC
chr15:25765041-25765059
AAGGCAGTGACTCTACCTTCAGTGTTTGAG25765041TTATAGTAGAGTAGCTTAGGGAACTCAAAACATTCATATCAGGCAGTTA
chr15:29598827-29598845
ACTTGTTTCATATTTTTTCTCAAGAGGAAG29598827TTATAGTAGTGTATCTAAGATATACTGAAAAATAATTGGTAATTTTTTT
chr15:81144835-81144853
CAAAAGTAATTGCATTTTTGCTGTTACTTT81144835TAATAGTTGCGTATCGAAGACAGCATTTGCTTTTATGGCATCGGAAACA
chr17:30597900-30597918
TTAAAATTTACCATAAATATTAGTCTGTTG30597900TTATAGTATAATATCGTAGTAAAGATGTTTTATTTTTCTGACTGGGTGC
chr18:27837520-27837538
TGTTAAAAGCCTTTCAGTTTTTCATTTCAC27837520TTATAGTAATGTATCCTAGTGAAACAATTGGACTTATAGAAAATACTAA
chr18:32568284-32568302
CTTTATGTCTGCTTTCCTGTCTTTTAGAAA32568284TTATAGTATTGTATCATAGAATGAATTCTGAAATTGGAGCAAGAATGCC
chr19:23261051-23261069
AGGAAGGCATCTGTCTCCAGGCATGTGTCT23261051TTATAGTAGAATATAGTAGAATGATTTATATTATTCCCGGAGAGTGATT
chr21:28649307-28649325
TATTCTGTTACTCTTTGCAATCAGCCACAT28649307TTACAGTAGTGTATAGTAGTGCATGTGCCGGTGTAGTGTGTGTGTGAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/CTACGATACGCTACTATAA
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : CTACGATACGCTACTATAA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.067 | 7.057 | search_minus_done; http://172.18.8.78:28018/match?q=TTATAGTAGCGTATCGTAG&k=3&no_gap=1&offset=0&limit=50
7.078 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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