GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-02 09:11:47, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:5599996-5600014
AGAATGAGTTAGGAAGAATTCCTTCCTCTT5599996CAAACTTTTTGGAATAGTATGAGAAAAATTGGTTTTAGTTCTTTAAAAG
chr1:12891027-12891045
ATTTTGAAATGACATCAACCAAAGCACAAT12891027CAACTTTTTTGAAATAAAGACAGAACTGCATTTAGAGGAAAAAATTCAA
chr1:12908350-12908368
AATTCTGAAATGATGTAAAGAAAAGCACAA12908350CAACATTTTTGAAATAAAGACAAAATTGCATTTAGAAAAAAAATCAAAG
chr1:12945781-12945799
ATTTTAAAATGGCATCAACCAAAGCACAAT12945781CAACTTTTTTGAAATAAAGACAGAACTGCATTTAGAGGAAAAAATTCAA
chr1:13005000-13005018
ATTTTAAAATGGCATCAACCAAAGCACAAT13005000CAACTTTTTTGAAATAAAGACAGAACTGCATTTAGAGGAAAACATTCAA
chr1:13007162-13007180
ATTTTAAAATGGCATCAACCAAAGCACAAT13007162CAACTTTTTTGAAATAAAGACAGAACTGCATTTAGAGGAAAACATTCAA
chr1:13115332-13115350
ATTTTAAAATGGCATCAACCAAAGCACAAT13115332CAACTTTTTTGAAATAAAGACAGAACTGCATTTAGAGGAAAACATTCAA
chr1:13117493-13117511
ATTTTAAAATGGCATCAACCAAAGCACAAT13117493CAACTTTTTTGAAATAAAGACAGAACTGCATTTAGAGGAAAACATTCAA
chr1:14916623-14916641
GCCCCCTACCCTCCAAGAAAGCATCAAAAA14916623CAACTTTTATAGAATAGAGATCACAGGAATAATAACACTACCAGTGAGC
chr1:21400150-21400168
ACACGCCACATGCAGATTTCGGTGCTTTCC21400150CAACCTTCTTGGTATAAAGGTCGACAATTCTATTACCAAGGGCTCATGA
chr1:22636332-22636350
ATGTGCTGCTGGTGGGCATGGAAGCTGGTA22636332CAAACATTTTGGAAAAGAGTTTGGCAATTTCTAACAAAGTTAAACATAC
chr1:23391297-23391315
ATAATCTACAGGACCAAGACAATCAGGATT23391297GAACCTATTTGGAATAGTGAGACTCTTCAAATCCTGTTAGTCTTGAAGG
chr1:31304788-31304806
GACTCAAGGTAAAAAGAAAAAAAAATGCTA31304788CAACCACTTTGGAAAAGAGCTTGGCTTTTTCTAGGAAAGCTGAAAACTT
chr1:41954758-41954776
TCTAATGGGCTAAGGGCCAGATTCCCCACT41954758TAGCCTTTTAGGAATAGAGGATAAATAAGCATTTATTGAGCATTGAATA
chr1:42151344-42151362
TACTATATCACAAACCCGATTTCTACCTTG42151344AATCCTTTTTGGAACAGAGTCAGGGTTTGAATAAATAAATATACTTGAA
chr1:43564108-43564126
ATACACTGTTGGTGGGAATGTAAATTAGTA43564108CAACCTTTGTGGAAAACAGTATGAAGATTCCTCAAGGAGCTAAAAATAG
chr1:49721252-49721270
ATACACTGTTGGTGGGAGTATAAATTAGTT49721252CAACCATTTTGGAAGACAGTGTGGCAATTCCTCAAAAACCTAAAGACAG
chr1:49862566-49862584
AATGCAGACATTCTCTAGGCCAGTGGTCCC49862566CAACCTTTTTGGCATAAGGACCAGTTTCGTGGGAGACAATTTTTCCGCA
chr1:55634534-55634552
GTAGTGCTTCCAGGCACTTACCAAAAAGTA55634534CATCCTTTTTGGAAGAAAGAACTTTCAACTTAAGCCTCAAACTGCCCCC
chr1:59382418-59382436
ATATACTGATGGTGGGAATGTAAAATAGTG59382418CAACCACTTTGGAAAAGAGTTTGGCAGTTTCCTAAAATGTTAAATATAT
chr1:60176531-60176549
TTACACTGTTTTTGGGAATATAAATTAGTT60176531CAACCTTTGTGGAAGACAGTGTGGCGATTCCTCAAGGATCTAGAACTAG
chr1:60733982-60734000
TTTTCATTCCACCATCCTCTACAGTCACCA60733982TACCCTTTTTGGAATGGAGAGCCAACTCTTCCATTATCATGCTGCCACT
chr1:69240424-69240442
TATATACTGTTGGGGGAATGTAAATTAGTA69240424CAACCTCTTTGGAAAACAGTATGGATGTTTCTCAAAGAATTAAAAATAA
chr1:71590108-71590126
TTACATTGTTGGTGAGACTATAAACTCTTT71590108CAACCATTTTGGAAAACAGTGTGGCAATTCTTCAAGGATCTAGAACTAG
chr1:71783886-71783904
TTCACTGCCAGGGGAAAAAGCAAAATGGTG71783886CAACCATTTTGGAAAACAGTTTGGCCATTTCTTACAAAATTAAGAATAT
chr1:71788688-71788706
TTACACTGTTGGTGGGAGTGTAAATTAGTT71788688CAACCATTGTGGAACAGAGTGTGGTGATTCCTCAAGGATCTAGAACCAG
chr1:72444454-72444472
ATACACTCTTGGTGGGAGTGTATATTAGTT72444454CAACCTTTGTGGAATGAAGTTCGGCGATTCCTCAAAGAGCTAAAAACAG
chr1:73207027-73207045
TTAAATGCATCTCTGATATCTCTGGAATTG73207027CAACCTTTTTGAATTAAAGTGTCTCTGTTCATTATTTAACTCTGAGTCC
chr1:73516486-73516504
TTTCACTGCTGGTAGGAATGTAAATTACTA73516486CAACCTTTATGGAAAACAGTATGGAGATTTCTTAAAGAACTAAAAGTTG
chr1:73623456-73623474
GTACACGACTGGTAGAAATGTAAATTGGTG73623456CAACCATTTTGGAAAACAGTATGTAAATTTCTCAAAATACTAAAAATAG
chr1:73705761-73705779
TTACACTGTTGGTGGGACTGTAAACTAGTT73705761CAACCATTTTGGAAGACAGTGTGGCGATTCCTCAAGGATCTAGAACTAG
chr1:74707881-74707899
TAAACACTATGACATCAACATAATCCAAAA74707881CAACTTTTTTGGCATTGAGTAGATACATCTTGGTCAGTAATTACAGTGC
chr1:75122345-75122363
CTGGTCTGGAAATATATTTGCTTAAAGCTT75122345CATCATTTTTGGAATATAGAAATTCACATGTGAAAATACCCACATAGAA
chr1:81704559-81704577
TCTTTCTTCACTGAATCCAACTTTTACTAT81704559TAACCTATTTGGAAAAGAGCCAGAAAGGAGAGAAAGAGGGACTGCCCTG
chr1:81710251-81710269
TTACACTATTGGTGGGAGTGTAAATTAGTT81710251CAACCTTTGTGGAAGACAGTATGGCAATTCCTCAAGGATCTACAACCAG
chr1:81883200-81883218
TTTCCTTCTTATATTAGTAATACTTTACTT81883200CTACCTTTTTGGAATGGATTATTTCTCTGTACAAGTCCTTTCAGCAATA
chr1:84808955-84808973
TTACACTGTTGGTGTGAATGTAAATTAGTT84808955CAACCATTTTGGAAGACAGTGTGGCAATTCCTCAAAGATCTAGAATCAG
chr1:90934460-90934478
ACACATTGTTGATGGGAATGTAAATTAGTT90934460CAACCTTTCTGGAAAATAGTATAAAGATTTCTCAAAGAACTGAAAGTAG
chr1:99591887-99591905
TTTCTGCATATGGCTAGCCAGTTACTCCAG99591887CAACATTTATTGAATAGAGAGTTCTTTCCCCATTGATTATTTCTGTAAG
chr1:101548118-101548136
ATGCTGTAATATCACATTTCATGTATTATA101548118CAACATTTTTGAAATGGAGTACTCCAAAGTAATTTGCTTCTTATGGTTA
chr1:104024442-104024460
CATACTTAACAGGAACATATTTAGCATTCC104024442CAAACTTCATGGAATAGAGATAGCTAGTATCCAGTCACTGTGGTATCAA
chr1:104148771-104148789
ATAGAGTTTTGGTGGGAATGTAAATTGGTA104148771CAACCATTATGGAATACAGCATGGACACTCCTCAAATAATTAAAGATGT
chr1:104181109-104181127
ATAGAGTTTTGGTGGGAATGTAAATTGGTA104181109CAACCATTATGGAATACAGCATGGAGGGTCCTCAAATAATTAAAGACTT
chr1:104275251-104275269
ATAGAGTTTTGGTGGGAATGTAAATTGGTA104275251CAACCATTATGGAATACAGCATGGAGGGTCCTCAAATAATTAAAGACTT
chr1:105754918-105754936
ATACACTTGTGGTGGGAATGTAAATTAGTA105754918CAACCTCTGTGGAAAAGAGAGTGGAGATTCCTTAAAGAATTAAAAGTAG
chr1:106717248-106717266
TTACACTCTTGATGGGAATGTAAATTAGTT106717248CAACCATTGTGGAATACAGTATGGCAATTCCTCAAAGACCTAGAACCAG
chr1:109300315-109300333
ATATACTGCTAGTGGGAGTATAGATTGATA109300315CAGCCTTTTTGGAAAATAGTTTGTAATTTGTTATCAAGAACCTTAAAAA
chr1:112228314-112228332
TTACACTGTTGGTAGGAGTGTAAATTAGTT112228314CAACCTTTGTGGAAGACAGTGTGGTGATTCCTCAAGGATCTAGAACCAG
chr1:112665465-112665483
AAACAAGCTAAAAAGCAGAATATCATATAC112665465CAAAATTTATGGAATAGAGCCAAAGTTTTTTTTGAAGGAAAACACATAG
chr1:113906422-113906440
AAGTTACTTGACGTGTCTGTGCTTGAGTTT113906422CAACATTTTTACAATAGAGATAATAATAGCCTTGACCTCTGGGCTTATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/CTCTATTCCAAAAAGGTTG
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : CTCTATTCCAAAAAGGTTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.717 | 7.708 | search_minus_done; http://172.18.8.78:28018/match?q=CAACCTTTTTGGAATAGAG&k=3&no_gap=1&offset=0&limit=50
7.729 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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