GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-02 23:29:39, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:15081402-15081420
CCTCTGCCTTTCCCCCACTTACAAAATGAG15081402AACAAAGACATGGATTTTCCGGATTGAAAAAATTAAGTGAAACAAGTCT
chr1:25492400-25492418
TATATACCCAAAAAAAATTGCAGCTACTCA25492400AACAAATACATGTATGTTCATAGCAGCATTATACAAAACAGCCAAAAGA
chr1:33997105-33997123
CCCAGGAGAACTGAAAACATATTAAAACAA33997105AACATGTACATGTATGTTCACAGAAGTATTATTTGTAATAGCCAAAAAG
chr1:47053650-47053668
AACTGCTAATACGCTACAATTTTAAAAAGT47053650GCCAACTACATGGATATTCTGTACATATTATCTCTAATTCTTATCATAA
chr1:49352031-49352049
TGTTTTTGGCTGAGACAATATGCCATGGTG49352031AAAAAGTACCTGGATATCCAGCTCTACCACTTCCTGACCCAGAGCTGAT
chr1:51155302-51155320
AAAACAAAACAAAACATATGTCCAAACAAA51155302AACATGTACATGAATGTTCACAGTAGCATTATTCATAACAGCCAAAAGG
chr1:52660429-52660447
AGATATTTATTGCACGTTAAAGGGTAAAGA52660429TACAGGTACAAGGATATTCATTATATTGTTGATAAGCATAAAAACATGG
chr1:52910138-52910156
CCAAGAAATAAGACACCTGAAACTGGACTG52910138AACAAGTTCAAGGACATTCACTATGCAATGTAAATGCACGTTTGTTGTG
chr1:52972115-52972133
CTCTTCAGTGTTCTGGAAAAATTTGTACAG52972115AACAAGTACATGTATATTGATCAATTATCCAGAGCTCATTAACTTTTTT
chr1:57256321-57256339
ATTGTTCTAGGAAGTGGGGATAGAGTTGAG57256321AACAAGAACATGTATATTCCTACCTTCAGGAATTTTTATTCTAATAACA
chr1:65880552-65880570
GATATTGTGTGAACTACAGTATATAATGAT65880552AACAATTAAAAGGATATTCTGTGGATGTCACGTATTTTGAAATGATAGA
chr1:72467512-72467530
AAAAATGTATCTTCCTAGAGGCTACCCTAA72467512AATAAGTACATGTATACTCTTGATTCACTTAAGAGTGTCATATCAAGAA
chr1:76507170-76507188
TTAATTCTGCACATTATTTTAATTATTTCT76507170AACAAGTACCTTGATCTTCATTTGTGAAATCTAGTGACCCAAAGGCAGC
chr1:77117615-77117633
CTTAAGAAAATAATTTATGTTCATAACAAA77117615AACCTGTACATGAATATTCATATCAACATTATTTGTAATCAACCCAAAC
chr1:77700156-77700174
CCAATGAACTGAAAACTTAGGTCCACATGA77700156AACCTGTACATAGATATTCATAGCAGCTTTATTCATAATTGCCAAAAGT
chr1:79148825-79148843
TGTTTACTTCATTCTTCCCAAGTGCCTGCC79148825AAAAAGTACCTGGATATGCAAACAGGTGTACAATTAAGTAGAATCTTAG
chr1:79401828-79401846
GACTCCGTCTCAAAAAAAAAAAAAAAAAAA79401828AAAAAGAATATGGATATTCTGTATACTGTACATACATCAAATGTTTTTA
chr1:81328622-81328640
GGTGAAGAAAAAACAGTATGTCCACAAAAT81328622GACAGGTACATGAATATTCATTTATGAAATTCTAGAACACGCAAAAGTA
chr1:82285504-82285522
CATTTTAGTAACATTCTTAACAGCTCTTTA82285504AACAAGTAATTTGATATTCTTTGGTTTCCTTAGATACCAGCCTGCCCCT
chr1:89941667-89941685
AACTAATATTAAGAAATTCCCTCAAAATAG89941667CACAACTACATGGATATTAAACAACCTACTCTGGAATGACTCTTTGGTA
chr1:96808366-96808384
AGATGTAGTTTGTGGTGGAAGATTTAGAGA96808366AAGAAGATCATGGATATTCAGGTAGGCCTATTGAATTCGAGCACCAAAG
chr1:101115543-101115561
ACTCAATATTAAGAAATTCACTCAAAACCA101115543CACAAGTACATGGAAATTGAACAACCTGCTCCTGAATGACTTTGGGAAA
chr1:101680322-101680340
AAATGAACTGAAAACTTACATCCATACAAA101680322AACCAGTACGTGGATATTGATAGCAGCTTTATTTATAATTGCCAAAGCT
chr1:102691610-102691628
AGGCAAAATACTTTTCCAACAAATTATGTA102691610AACCAGTAAATTGATATTCCCAGTTGACATCTGACAATATTATACACAT
chr1:103093690-103093708
AGTTTTAGTGCAGCTTATAAAGCATAAATG103093690AAGAAGTACATGGATCTTCACTGTGACTGGCTATTATAAACATATATTC
chr1:103389040-103389058
ATTTCTAAGATAAAATCAAGTATAAAGTTC103389040AATAAGTACATGGAAATTAAGATTCAGATACTAACATTTGTTAAAATAC
chr1:104010688-104010706
GAGACTGACTCACCTTTTTTATTATGAGGC104010688AACAGGTACATAGATATTCATGAAAAAAGGGTTCATGTTGTTCCCAGTT
chr1:105607729-105607747
AAAATTTTTCTCTCAACTTTTTTCTCAAAA105607729AGCAAGAACATGGATGTTCTGTGTATATATGAAGTGAGGAGGCATTGTT
chr1:108586106-108586124
ATTTATTTGGTGACTACTGTGTACTGTGTG108586106AACATGTACATCGATGTTCATATAAAATTCCTTATAATCAAAAAACTAG
chr1:111398225-111398243
AAATTGGTTGAAAACGTATGTCCATACAAA111398225AACCTGTACATGGATGTTCATAGCAGCTTTATTCATAATTGCTGACATT
chr1:113717435-113717453
AATTAATAACAAGAGGAACTTTGGAAACTG113717435AACAAATACATGGAAATTAAACAATATGCCCCTGAATGACAACTGGGCC
chr1:118387951-118387969
ATCAAGACAATGCAATTTCACTCAAAACCA118387951TACAAGTACATGGATACTGAATAACCTGCTTCTGAATGACTTTTGGGTA
chr1:119334556-119334574
ACTCAAAACTAAGAAATTCACTCAAAACCA119334556TACAATTACATGGAAATTCAATAACCTGCTCCTGTATGACTTCTGGGTA
chr1:152560252-152560270
AGTCAATACTAAGGAGATGTCTCAAAACCA152560252AACAATTACATGGAAATTAAACAGCTTGTTTCTGGATGAATTTGGGGGA
chr1:157376366-157376384
CTAATATATACACACCAACATGTGCAAAGA157376366AACAAATATAAGGATATTCATTGCAACATTGTTTGTTGTGTCAAGCGGC
chr1:157655598-157655616
AAATAAATATCAAGAAGATCTCTCAAAACT157655598AACAAATACATGGAAATTAGACAACTTACTCCTGAATAACTCCTGGGTA
chr1:160530145-160530163
GCTCAAAATTAAGAAATTCACTCATAACCA160530145CACAATTACATGGAAATTCAACAATCTGTTCCTGAATGACTCTTGGGTA
chr1:162384465-162384483
CGGCCATAATTGTTTTACACATTGAAAATA162384465AACAAGTAAAAGGGTATTCCTAAAAGGAGGAATAAAAACTAAAATAATG
chr1:164818017-164818035
TGAGACCCTGAGGGGTGAGAATGGGCAGCT164818017AGCAAGAACATGGAAATTCTGCTTGGCACTACAGTCATAAATAGAAAAC
chr1:166684461-166684479
AAATCAATAAAAAAGGAACATTAGAAATTG166684461TACAAATACATGGAAATTCAACAACATGTTCCTAAATAATCAACAGATT
chr1:177736533-177736551
TAGAGAAGCTCTTGCAAGTGTACATAAGGA177736533AACATGTACAGGGATGTTCACTGCAGTTATTATCTGTAATCAGAAAAAA
chr1:194253340-194253358
ATACTAATTTATCCTCTAATATTTTAGACT194253340AACAGGTACATGGCTATTTGTGCTGATTGGGACACCATTAAAACAGAGA
chr1:198449844-198449862
ATGGCCAGATAAGTTTCAGCTGTGGAATGA198449844AGCAAGTACATGGCTACTCAGTATATGTCTTTCATTTATTCACCCATTC
chr1:199150277-199150295
AAACTTTCTTGCCTCTTGAAAGACATCTAG199150277AACAAGTTCATGAATTTTCTTGTCATTTTTAGTTCAGTAACTATAAAAC
chr1:200689643-200689661
CTCTTAACAACCCTTACATGTACTCAAGAA200689643AATAAGTACAAGAATATTCTAACACTGCTTGCAACAGTGAATAACTAGA
chr1:207674220-207674238
CAACACGTGGAAACAATCCAAATGTCCCTC207674220AACAAGTAAATGGATAAACTAAATTAAGATATATTTATGCAATTGAATA
chr1:210169188-210169206
AATCAGTATAAGGAAGATCTCTCAAAACTG210169188CACAAGTACATGGAAATTAAACAACTTACTCTTGAAACTCCTGTGGGAA
chr1:211047850-211047868
CCAGAATAACTCTCTCAAAGGTCTCATGGA211047850AACATGAACAGGGATATTCATCACAGCACTATTCACAAATAGTGAATAC
chr1:219243556-219243574
TAAGATAATTGAAAACATATATACAACAAA219243556AACTTGTACATGGATTTTCATTCCAGCATTCTTCATAATAACCAAAAAG
chr1:219685710-219685728
CTGAAACACTTTATGTTTGTACTATAGTTA219685710AACAAGTAAATGAATATTTGGTAGATAATGAGAACTAGGATTCTCACTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/GAATATCCATGTACTTGTT
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : GAATATCCATGTACTTGTT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.014 | 6.005 | search_minus_done; http://172.18.8.78:28018/match?q=AACAAGTACATGGATATTC&k=3&no_gap=1&offset=0&limit=50
6.026 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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