GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 22:37:02, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:20215492-20215510
AATTTTGGTACATTAAATGTAAAATAACTA20215492CATAAATTTGTGATAAATCACATCTCTTAAACTAAATTCAAGAATAGGC
chr1:24167290-24167308
AAACTGCTGATTTATTTGAGGCATTGTTCT24167290CATAAACTTTTCATAAAGCATCAGTGATTTCACCTTCTTCCACTGAAGC
chr1:27785971-27785989
AGGCATTGAGCCATCCTGCTGGGCCACATT27785971CATAAATCTGACATAAATAAAACATCTATCCTTTTAAATATAGGAATTC
chr1:32815853-32815871
ACCAGTGTAAACCCAGTGATTAACTCAGTG32815853TATAAACCTGTCACAAATCACTAAAACATGCCCTTGATAAATAATTGTT
chr1:34042456-34042474
TTTTTAGTTTGAATGTATATTACTTGAAGG34042456GAAAAAACTGTCATAAATCATAAAATCATAAATCATAAAAGGTAATGCA
chr1:37806213-37806231
TATTTTCAACTTACAATGGATTTATCAGGG37806213CATAACCCTATCATAAGTCAAGGAGTATCTGTATTCTGTTATAGCAGCC
chr1:45491527-45491545
ATTTTTGACCTTAAGATGGGTTTATTGGGA45491527CATAACCCTGTCATTAGTCAGGGAGCATCTGTGTATCATTTATTTCCTT
chr1:45830567-45830585
CTTAAATGACTCAATGTGCCATCAGTAAGT45830567CAGAAACCTGTCAGAAACCAGTATCAATGTCAAACAGCCAAATTAGTGG
chr1:48156399-48156417
CTCATCGGGGTTCAGAGAGACGTGGTGGCT48156399CATCACCCAGTCATAAATCCCCACCGGGACAGCATAGTGGAAGAGGATG
chr1:52283147-52283165
ACAGACAAGTAGAACTCCTTTCCCAATCTG52283147CATAAACCTGCCCTAATTCAGAGGAGTAAATCCTTGGGATTTATGTACC
chr1:56343275-56343293
AGAAAAATGACTCAGATTTCCACAGAGGTC56343275CATAAACTTGTTATAAGTCTTACAACACCTCATGTCATGACAAGCAATT
chr1:60274082-60274100
GATTTATCTTTTTTGTAACTTTTGTTTCCC60274082CAGGAACCTGTCTTAAATCCTCCAAGGTGTCATTCATTTAGTTATTTGA
chr1:62188775-62188793
ATCCACTTAAGAATTATTGATAAATAAATT62188775CATAAACATGTAAAAAATCATTTTGGTGCCAACTGAATGTTAAATACAC
chr1:66076046-66076064
TTTATACTCTTAAAAATTTACTTCATGGTC66076046CATAATCCTGTTATTAATCTTCGGAAAGCTCAACAATCCTGTATTTTCA
chr1:67496335-67496353
AGTAATCAGAATTATTTGGCAAAGACCTCA67496335AATAAACCTCTCATAAACCTAAGTTTCTTCTCTCCTCTAGCTCTAAATA
chr1:70089136-70089154
CTCTGCTATGAGGAAAAAAAAAACAAGTCA70089136CATAAACCTACCATAAACCTAAGGAAATTAGCAATTTAACTTCTAAGAA
chr1:77693837-77693855
TTATCCAGAGCTATTTGAAAGGAAAATTTA77693837CATAAACCTATTATAAATACTTTTGTGACTGCTAAATAAATGTTGTTAC
chr1:77917199-77917217
TAAATAATGCTGCCCTGGCACATCATGGCA77917199CATAAACTTTTCCTAAATCTCTGAATATTACTCTAGGAGTAAATAAGGA
chr1:87175189-87175207
TCCTGCCCTCAGAGACTTCATAATAATAGT87175189CTCAAACTTGTCATAAATCTTATTTGTACTAAATAGCCATTTTGTGAAT
chr1:90516709-90516727
AAGTTGGGTAGGATGACTGTTTGTCCTATC90516709CAAAAACATGTCGTAAATCCTTCTTCATCCCTCCTCTGCATACTTTGAA
chr1:92646202-92646220
AACAAGGACAGTGTTTCTGAACAGAAGCCT92646202CACAAACCTCTCATTAATCTTGCATCTGAAATAAGTGATGCAGAAGCAC
chr1:92783388-92783406
AAATAACAAGTTGTATAGCAGGAGATGTTG92783388CATAAAGCTGTCTTAAATTGCATTCATAATTTACAGTAATGTTTATATA
chr1:94160640-94160658
ATTCCTGTTCCCTGGCACCTGGCCCTTGAG94160640CATAATCCTGTCATGCATCGACATCATTCTGGTCTATCAGGCCCCTCCT
chr1:98361019-98361037
AAATAGAGGAAGTAGCATGATTTTCAGGTT98361019CACAAAACTGTAATAAATCATAGCGTGACTAGTTGCCCTTCATCTATAT
chr1:106411816-106411834
TGTGCAAAATTTGATGAGTTTGGATATACG106411816CTTAAACCTGTCAAAGATCACCATCATTAAAGTAATAAACATATTCATT
chr1:108352152-108352170
TGCAAATATTTTATGAGCGTTTATAATGTG108352152CAAAACCCTGTCATAAATATTTTTGAGAAAACTAAAATTTGTAAACCAA
chr1:110076862-110076880
TCTCAGCCTGGCTTGCAGGGGGCGCAGTCC110076862CATAAATCTACCATAAATCTACCTTTCTATTCTCACTTCTTCCCTACAG
chr1:113030013-113030031
TCTCAATTTATGATAGCAGGGTTACCTCCT113030013AATAAACCTATCATAAATTTAAAATACCATGTCAAAAATGTATTTAAGA
chr1:117957835-117957853
GGTGTGCGACTTGAGAAAGTTCCTTATCTT117957835CCTAAACCTGTCATAAAATTGATATTCCATTATAGTATTGTGAGGATTA
chr1:147052369-147052387
TCTTAAAGAGTTTAGACTTAATTTTGAAAG147052369CATAAACATGCCATAAAGCACCTCCATTTCTAAATCCATTGTCCCAAAC
chr1:147139716-147139734
GAATGAAGTGACTTGTCACATATATTAATC147139716TATAAACCAGTCAGAAATCAGGAAACATGTACCAAAGACAAAAAATTTT
chr1:147216876-147216894
GATAATCAAATAAACTGGAGGTCTGACAAA147216876CATAAGCCTGACACAAATCACCACGGTAGAGAATCTAGACCAGAATCAG
chr1:153189392-153189410
CTATGAAAACTCTGTGAGTAACTCCACTTT153189392CATAAGGGTGTCATAAATCAAGGTTGAGAAGATGAAGATTGTCTGCCTT
chr1:153681343-153681361
AATTAGAAAGTGAAAAGAAATTACAAATTT153681343CAAAAACCTGACAGAAATCCAAACATCTCACAATCTAGAAGGATATCTT
chr1:157922382-157922400
AGCAAACATCAGAAATGAAAGGGTTCAGAA157922382CATACACCTGTCATGCATCGGCTAATCTTGAAACAAATCACTTGAACAT
chr1:166222238-166222256
TATTTTCAATTTACAATGGGTTTATTTGGA166222238CATAGTCATGTCATAAATCAAGGAGCATATATATATATGAAGTCTTTTT
chr1:167360329-167360347
GTTTTAAGCACTACCACTGACTTACTCTTT167360329GATTAACCTGTCATAAATAATATATTTTTTTAGAGACAGGGTCTCGCTA
chr1:167764181-167764199
TACATAATCACAATATCTTGTCACATTTAA167764181CAAAAACCTGTCCTAAAACACATTTTTTACAAACAAAATCCTTGGTTTT
chr1:169263047-169263065
GATATCTTCAGGATACTGACTCTTCCCATT169263047CATAAACATGGCATATATCTTCATTTATTTATGTCTTTCCTTATTCTCT
chr1:174575033-174575051
AATTGATGATTTATTTGGGGGCATTGTCCT174575033CATAAACTTTTCATAAAGCATGATTGATTTCACCATTCTTACACTCAGT
chr1:178383308-178383326
TATCCTAAATTGAAAAGTATTTAACGTCCT178383308GATAAACCTATCATAAATCAAAAAATTGTTCAAACCATCTTAAATGGGG
chr1:182778267-182778285
CAACTTACAATTTACATTGGGTTTTAAAGA182778267CATAACCCTGTCATAAGTCAGGGAGTGTAATGATGCTTTCACCCCATTT
chr1:183863454-183863472
AGTGAAGCTGTATCTAGACATTAAAGATCC183863454CATAAACCTTTCTTAAATGCAGAAGTTACCCCCCGTACTCTAAATTAAA
chr1:187143160-187143178
GTAAGAAAGCTATAACAATTTTTTTAAAAG187143160CATAAAACTGTCATAAAAATAAACACATAGATTAACACAACAAAGTAGG
chr1:190080021-190080039
GAATCACAATCTATGATTCTTCTAGCACAA190080021GATAAACCTGTCAAAAAACTATCATGAACCAGAATACACTATTTTATTA
chr1:190638137-190638155
TACAGAAATATATTAAAAATGAATTTACTT190638137CATAAAACTTTCATAAATCAACAGAAAATAATTAAGATATAAGCAAGAA
chr1:199945619-199945637
CCACCTAGTCAATTTGACTGCTTTCCTGAG199945619CATCAACCTGTAAGAAATCAAGACAGAAGATAATTCTCATAAAAATTCC
chr1:217440590-217440608
CAGAAACCATTGAAGTCAAGCTGTATTCTA217440590CATAAACATGTCCTAAATTTAATTTTTCCTTGAGAATTTCCAAGTCAAA
chr1:219508408-219508426
ACCCACTTCTCAAAACATTTCCTCCATATA219508408CAGAAAACTCTCATAAATCAAGTCAAATTTTCTTCATCCAACTACATTT
chr1:220437637-220437655
TTATTTTATGTAAATAAGTGAGGAAAACAA220437637CATAAATATATCATAAATCTTGATAATTAAACAAAAAGTAAAATTTGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/GATTTATGACAGGTTTATG
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : GATTTATGACAGGTTTATG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
5.799 | 5.789 | search_minus_done; http://172.18.8.78:28018/match?q=CATAAACCTGTCATAAATC&k=3&no_gap=1&offset=0&limit=50
5.810 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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