GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-05 23:38:29, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:8702494-8702512
GATGAAACCTAAGGAAGTTTATGCACAACA8702494CTGAAACATCTAAGAGAATTTTTTAGGGCTGTTTCACTTGTAAGTCTAA
chr1:15657692-15657710
TTTGAGGGGGAAGAGGAGTGTGAGGTGCCT15657692GTGAGACATCTAAGATGAGATGCCCAAGAGACAGCTGTTTCCCCAGGTG
chr1:23470969-23470987
TTCTATTAAATCCATTTAAGAGTTAAATTG23470969GTGAAACAACTCACATAACACCAACAGATCATACTGGTAGCTCAGGTCT
chr1:28855170-28855188
AAAAACAGAAAAATACATGTAATGCTCCTT28855170GTTAAACATCTTAGATAATATAGGAAGATAAAACGAAACAAGTAATGAT
chr1:39375607-39375625
TGGAGTAGTGTTATTCCTAATAGCCAAAAA39375607CTGAAACAACTCAGATAACCTTCAATGAGTGAATGGTTAAACAAGCAGT
chr1:50195334-50195352
TACGGAAGAAACTGATGTCGGAAGACCCAG50195334GTTAAACATCTAGCATAACTAGCAGCAATATATATTTGAGGGAAGTCTG
chr1:56332370-56332388
TGAGTTAAAGCTTTATTTCTGCTCTTAAGA56332370GTGAAACATTTAAAATAAGTTACTATAAAATATTATTGGCCGAACACTG
chr1:59534603-59534621
AATGTGGCTTTTGAGAAACATATAATGCAG59534603TTGAAAAATCTAAGTTAACACACAAGAATGGCCTTGCAAAAAAAAAACA
chr1:68673773-68673791
ATACCAGAGATGATTCTATACAAATTTTAA68673773CTGGAACATCTAAGATAACCCTGAGAAATATCCCAGGCATATCTTAAGC
chr1:79152873-79152891
AGACTGCCAGAAACCAGTCAAGATTTGCAT79152873GTGAAATATCTAGTATAACCCTGTTAATCTTTTTGTGTAGTTCAAGGTG
chr1:86607320-86607338
CAGACAGGTTTCTACTTAATCATCCTCTAT86607320GTGAAACATCTCAGTTAACTAGCCTACCCATGCAAACAGTTGTTAAGCA
chr1:87722847-87722865
CAGACAGAAACTCCATGAAAGTTAGACCAA87722847GTGAGACCTCAAAGATAACTACTAGGATTCATCCATTGCTGTTTTCTCC
chr1:87769961-87769979
TTTATTTTTAAATAAATTTCATTAATTTAA87769961GTGAAACAGGTAAGATAATTGTCCTCCTAGTTAATAATAATAGCCAAAA
chr1:89127582-89127600
CAAACAAACTTCCTTGTGTTTTCAGTGCCA89127582GTGAAACCTCTAACATGACACCCTCTAACTCTGACAACCACTACTTGAA
chr1:92095896-92095914
GTCTTCTTAGATTCAACAGCAACAGCACAA92095896GTGAAAAAACTAAGATAAATTTGACACCATTAAAATTAAAACTTTCTTC
chr1:97040196-97040214
GCTGTGAAAGGGGACCTTTGAGCCTTTTAA97040196GAGAAACATCTTAGAAAACTTTTGCAGCCATATTGAAGTCAATCTCTCC
chr1:103799594-103799612
TAGTACCTGAAGGTGTCATCAGTAAAAGCT103799594GTGAAACAGCAAAGATGACTGCCTGCCCCTTCCTCTGGGAGTTCCATCC
chr1:103939326-103939344
TAGTACCTGAAGGTGTCATCAGTAAAAGCT103939326GTGAAACAGCAAAGATGACTGCCTGCCCCTTCCTCTGGGAGTTCCATCC
chr1:147283191-147283209
AAGCCCCATTGAATGGGTATGAATACTTAA147283191GTGAAAGATTTAAAATAACTCACCCAAGATCAAACAGCACAGGGCTGCC
chr1:159565206-159565224
TAAAACATCGCTGATAGGTAGCGAAATGAA159565206GTGAAACACATAAGAGAACTCCTTTCATGGAGAGTGATGTGGCTGGGAA
chr1:161896959-161896977
AAACTTAGGGGAGTTTAACACAACAGCCTC161896959ATGAAACAGCTAAGAAAACGGGTTGAGGGAGGTGAATGGCTGATCCAGC
chr1:170300001-170300019
CTCCTGCATCCCTAAAGGTAATTTGTCTAA170300001GGGAAACATTTAAGATAATCAATAATAACTACAGTTGACTCTCATTATT
chr1:171044883-171044901
ACAGAAATTTATTTTCTCATAATTCTGAAG171044883GTTAAACATCTAAGATCAATTTGCTGGCAGATCTGGTTTCTTTTTTTTT
chr1:184693109-184693127
CAAAGGCCGATAGGATATTTTAAGAATTAG184693109GTTAAATTTCTAAGATAACTATTTATAAACAAATTTCCTTAAAACTCAA
chr1:185469444-185469462
TCATATGCTACAGGGTGTACTTAGTTAATG185469444GTGAGGCATCTGAGATAACCCATTCATGATGGTCAGCTGGTGTCCCATG
chr1:185701368-185701386
AACTCAACCATATCCATAATCACATTGAGT185701368GTAAAACATCTAAGAGCACAAATGAAAAGGCAGAGATTATTAGCCTGGA
chr1:188573185-188573203
TGTTCATTTCCATTTAAAGCTTAAAAGCTA188573185GTGAAACCTCTAAAATAATTTACTGAGCAAAAATTTGCCAAATATTATT
chr1:189620522-189620540
TGTTTTGACTTTGACAAAAATTATGTAGAT189620522GTCAAACAGCAAAGATAACTAAAAAATAGAAAATGGATTTAGGAATTAA
chr1:190470104-190470122
TGCCAATATTTGGTAAATCAATGATATATA190470104TTGTAATATCTAAGATAACCACCAAGGAAAGAGTGAAAAAGTTGGTAAC
chr1:190794908-190794926
GAATGGAACAATGAAGTAAATGAATGTCAA190794908GTGAAACAGCTAAAATAATTCACATAGTAATGGATTACTTGGAGACCAC
chr1:195350951-195350969
CTTTTGTCAAAGAGAAAAACATGAATATCA195350951GTGAAACAGATTAGATAACCCAAAAATAGGCCCCATCAAATATACCCAA
chr1:195560746-195560764
TAGAAACCCAAGTTGTAGAAAAACTGTAAT195560746GGAAAACATCTTAGATAACTAAAAATAAGGATTTACAGACTTAAATTAT
chr1:199261110-199261128
CCAGTCCAATGACCTTTAGCATTGGGAATG199261110CTGAAACATCTAAGAGCACCCCACCTCCAATGCTGGTTCTGGAAATGGC
chr1:207821652-207821670
AGAGGAACATAGAATTATAAAATGAATAGG207821652GTGCAACATGGAAGATAACAAAACTAAAAATGAAGAGAAGGAAAAATAA
chr1:210940979-210940997
TTTAGGGAGCACATGAATGAGAAATCTTGG210940979GTTAAACATCTAAGACATCAAGAAGCCAACTTGCTTGCTTGAGGATGAA
chr1:216064460-216064478
TTTCTCCTGCATATGATGATAGTATTATGG216064460GTGAAACATCCATGATAATGAGATGAACTTGCACTTCAAACCCCCACAA
chr1:216766809-216766827
TTCCCCATATCCCAACCCCATCTGTTTTAA216766809GTGGAACATCTAGGACAACTAGGCTAACCACGGTTTAGAAGATTAGATT
chr1:217218710-217218728
ACCATTGACACAACCCAGAAGTGAATCCAA217218710GAGAAACTTCTAACATAACAGTCTCCCCACAAAATCTCCAGACTCATAT
chr1:217798217-217798235
AAATGAAATCTTCTGGGAACAGTTAATATT217798217GGGTAATATCTAAGATAACAATAGTTCATCAATAGTTTTATTAAAATAG
chr1:225153930-225153948
ATTGATTATATTAGAAGCTGAAATAAGAAA225153930GTGAAACAGCTAAAATAATTGAGAAGAAACAAGTAATCTTCAAGGAAGA
chr1:226958406-226958424
ATTATTATTTTAAATAGAAACAGAAAACTT226958406TTGAAACATTTATGATAACCCTGACACAGGAACATGATTCACTGTTTCT
chr1:230363698-230363716
GACAGGGACAGAATGTAGATGTATTGATTT230363698GTGGAAAATCTAAGAGAACCTGCAAACTGACTATCAGAACAAATAAGAG
chr1:233235545-233235563
TGCACCACACTGGCCATTGTGTATAAAATA233235545ATGAAACATTTAAGATAAGACTTAATGGAAACAGCCACACCAACACCTT
chr1:236690341-236690359
AAAAAAGATGACTTCCTGAAGCGGAAGCTT236690341GTGAGACATTTAAGATGACTTTGCGCATGTTAGAGTTAAAAACATCCCA
chr1:237189165-237189183
GTATACTTTAATTTCCTCTTTCCATCCATT237189165GTCAAACATCTTACATAACTTTATAACATGTTATAAACTCCACAACACA
chr1:246567211-246567229
TGACAAGCATAGAAAACATATACAAAGCAT246567211GTGAAACGTCTCAGATACCCTGATTCAAAGTCAAGGGTCTCATGGAAAT
chr1:246658063-246658081
TTAAATTTTTATATACTCAAATTCATTTGT246658063GAGAAACATCTATCATAACCATGCCAATTAAAAATTCAACATAATTCCT
chr1:246710184-246710202
AATATGAGCACCTTGATATCAAAGACACAT246710184GTGAAATATCTAAAATAAATTCTGTCATAAAATATGACATTTGCTTATT
chr1:247355189-247355207
ACCCTAAAGAAATGGAGATGTATAAGTTAC247355189CTGAAAAATCTGAGATAACCATTTGAATAATGCCCAATGAGTAAAACAG
chr2:20548881-20548899
TCTTTTAAAAAGTTGAAATCTTGCTAAATG20548881CTGAAACACCTAAGAGAACTTTGGACTCAAATTAAGGAAAGCATGTGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/GTTATCTTAGATGTTTCAC
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : GTTATCTTAGATGTTTCAC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.704 | 6.694 | search_minus_done; http://172.18.8.78:28018/match?q=GTGAAACATCTAAGATAAC&k=3&no_gap=1&offset=0&limit=50
6.716 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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