GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-05 22:26:46, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:6900669-6900687
GATGTCTGTTAGACACCAGAGTGATGATGT6900669TGAATAGGCAACTTCCATAAGTCTGGGGAGAGGTCCTGTCTGGAGATAA
chr1:9103094-9103112
GATGTCAATTAAAAAAACATAGGCAGAATT9103094TAATTTTGCAGCTTCCAAAGTATTTTCACATATATTGCCCTATTTAATT
chr1:25502415-25502433
TGGAAACAGTTTGGCAGTTTCCTAAAAAGT25502415TAAATATGCATCTGCCATACGACCCAGCAATTTCACTCCTATGTATTTA
chr1:30177771-30177789
GGGTTCTGAGACTTTCAAGATCTTGTTTTT30177771TAATTCTAAAACTTCCATAATTTTATCATGCCATTTAACGTGTTCGATT
chr1:54198786-54198804
TCCACAAAGTAAAACCGAAGAAAATGATGA54198786TAATTATGCAACATTCAGAACAAAGAACATAAGAATATATTTTTTTAAG
chr1:64625752-64625770
CTCTTGCATCTAACAGCCTGTTTTTTTTTC64625752TAATTATTCCAATTCCATAAGAACATTCATTCATTCAACAAATATTTAT
chr1:68604266-68604284
ACATCCCTTGAAGTAAGCCACTCATGAAAA68604266TAATTATGAAGCTTTCATATGCTTCAAAATTCTGCAAGAGATGTTTTGA
chr1:68693594-68693612
TACTCTGCATAACTGTAATTTAATTTCTTA68693594AAATTCTGCAACTTCCAAATAAACAACAGCAGCAGAAACAAAAGCTCAC
chr1:70110941-70110959
CTACCTGAACTAATTAAGACTGACAAATTC70110941TAAATATGCAAGTTCAATATAAAATAATCAATTGTATTTCTGAAAAATT
chr1:79728213-79728231
AGTTTTGCTCTTTCTGGACAATCAGAAACT79728213TAACTATGATACTTCCATAATTTCATCTCTTATATCCCTGGGTCCTATA
chr1:81684043-81684061
CATTCATGCTTCTGGAGAACTAGGGTAAAT81684043TAGTTATGCAACTTACACACCAGTGTGAAGCAATCTGTGACAGCATTTA
chr1:83712281-83712299
GATGAGACTTATTAAATATTATTTCATTAA83712281TAATTATGTGGCTTCCATACCTGATGATGGACATAGCTGGAAGATCATT
chr1:89799503-89799521
TCTGTCTCAAACTAATAATAATAATAATAA89799503TAATAATGCAACTAACATATGTTGAACAATTATTACCTTTGTGGCAGGC
chr1:96163611-96163629
AGTTTGTGGAATTGTCATTGCTTTAGTCTA96163611TATTTATTCAACTTGCATAAGGTAAAACTATAAAGCTACAGGCCTTTTT
chr1:104164398-104164416
GCAAGAATATTCTGACATCCTATGAAAATA104164398TAATTATGTAACTTCCAGGCTGTACAAAATGGCAGTTGGATTTATGCTT
chr1:104258523-104258541
GCAAGAATATTCTGACATCCTATGAAAATA104258523TAATTATGTAACTTCCAGGCTGTACAAAATGGCAGTTGGATTTATGCTT
chr1:105054007-105054025
ATGAGAAATATTATGGACAATTCTTTGCCA105054007AAATTATTCAACTTACATATAATTTAAAAATTCTACACAAATTACCAAA
chr1:105081564-105081582
CAGTGATATATTTAACGAAGAGATTTTGTC105081564TAATTCTGCAAATTACATACAAAGCTGCTAATTTGTCTTCACTGGTGAA
chr1:108122851-108122869
CTGAATGGACAAGTATCTCGGCAGGGTATT108122851TAATTCTGCAAGTTCCTTATGTCTCCTCCTTCCATTCCTTTAGCTCATC
chr1:115670593-115670611
CAGTGATGGCATTTTAAAAATTCTATTTTG115670593TGATTATGAAACTTCCGTATGCTCATTTGGAAAACACAGAAAAGCACCA
chr1:121168317-121168335
CCTTAATAACATTACTGACTCATTGGTAAT121168317TAAATATGGAGCTTCCATATTTAATTCAAGTAATTCCCAAACTTGAAAG
chr1:145398265-145398283
TAAGTGTCTATAATAGGAAGCTGGCTAAAC145398265TAATTATGGAAAATCCATACAACGGAATGCTATGTGCCAGAAGAAAGAA
chr1:163195422-163195440
ACTCACATATCACAGTCCTTGCAGGACTTA163195422TTATTATGTAACTGCCATAGAGTTAAGTGTATGAGACACTTGATACCCT
chr1:163647926-163647944
TTTTGAATTAAGTCACTTCTCTATTGTTTT163647926TAGTTATGCAACTTCCAACCATTCATTCAACCTCTCTGAATCTGAGTCT
chr1:174723376-174723394
AAAAAGAGCCTTCTCACCACTAGTGCCCTA174723376TATTTATGTAACTTCCTTATATGAATCCTGAAGCTGACCCCCCCAATAG
chr1:189605388-189605406
GATTTAAAATGTTTGCATGACTGCCTTGCA189605388TAATTATTTAACTTTCATAGGTATGAGTACCATGATAGTCATAAATGCT
chr1:194981416-194981434
CTTATTGATTATAAGTGTTACCTAAGTTTC194981416TAATTGTGCCACTTCCACAAGTTTCTCCTCATTGTAAAGCATCTTATAC
chr1:195853166-195853184
ACATGTCACATGGGGTCCAGGTCTTATATT195853166TATTTATGTAACTTCCAGAGTTCTTTGCTATTGCAGGAGTGTCTATACT
chr1:199504910-199504928
AAGGAAATTTATGAACAATTTTATGCAAAT199504910AAATTTTGCAACTTACATAAAATAGACAAATACTTTGAAAGACACAAAC
chr1:211207383-211207401
TCCAGAAGAGTTTGGCAGTTTATTAACAAC211207383TAAATATGCAACTACCATATGACCTAGCAATTACACTCCTGGGCATTTA
chr1:215457879-215457897
ACACTTGGCTTATATTTGGCTCATATTCAT215457879TAAAAATGCCACTTCCATATAACTTCCTGCATTTTAAACATTTATTTGC
chr1:216167905-216167923
CCATGTCTTCAGGATAATTTCTTACCAGCT216167905TAATTAAGCAACTTTCAGATGGGTTAAATTGTGGCCTGAGCATGAAAAT
chr1:216334761-216334779
CTTGATCTACTATGGCCTACTTCATATTAT216334761TAATTCTTCAACTTCCATAACTTTTTAGGAATTTTACCACAGTTTAGCT
chr1:216658468-216658486
TACAAACATTATGGGAGTTACTAAAAAGAT216658468TAAATATAGAACTTCCATATGATCCAGCAATGCCACTACCAGGTATATA
chr1:220694728-220694746
ATGATTAAATCTACTATCCATTCATCTGCT220694728TAATTGAGCAACTCCCATATGCTAGGCACTGTGCTAGGCATTAGAGACA
chr1:221319192-221319210
AATAAATAATAAGCTGATATGGTTCTTAAA221319192TAATTATCCAACATCAATAGCAACAAACAAAAGTCCCAGGTTCAATTGT
chr1:221852164-221852182
ACAAACAGGACTAATGGATTTTAATGTCAC221852164TAATTATGAAAGTTTCATAATACGGTTTCAGAATCCAAGTTGCAGCTTA
chr1:223878454-223878472
AGCACATTTTCATTTTGCACCCAGCGCTAT223878454AAATTATGCAAATTACATACCCAGCAGGGAGGATAGGTTCCTGTGAAGA
chr1:226897357-226897375
GACGTGATACTTCCCTGACCTTCCTTTGTC226897357TAAATATGAAACTTCCATGACTGGGGACCAACGGTGAGAAGCGGCAGTG
chr1:231964396-231964414
AATAAAATTTTTGAAATGAATGAAAAATGT231964396TTATCATGCAACTTCTATAACAGAGCCCCTGGTTGCATTTTTTTGCATT
chr1:239735278-239735296
CTCAGCCAGTATGTCATATCAACTACCATT239735278TAATTATAAAACTACCATATGCCAGACGCTATGCTAAATAATTCACAGA
chr1:245036010-245036028
CTTTGATGTTATGGATCTCTGTCTTCGTGT245036010AAATTATGTAACTTCTATAAAATAAGATGTGCCAATTAGAAAAGAAAGT
chr1:245993060-245993078
AAAGAGCCCAAATGTCCATCACTTGATAGA245993060TAAATATGCAACATTCATAAAATATTACTTGGCAAAAAAAGAAAATACT
chr1:246196309-246196327
GGATCGCTGCAAGTTGCAAGCTAAACCTGC246196309TAAATATGCAACTAGCATACAACCGAGCAATTTGCATTCCTGAGCATTT
chr2:11563885-11563903
CCGACAACCACTAATCTGTTTTCCATTCTT11563885TAATTTTGCTACTTCAATAATGTTATATAAATAGGACAATACAGGATAC
chr2:14755866-14755884
TTATATCCTATGTTCATGAATTTTCTTATC14755866TAATTATCAAAGTTCCATAACTGGTAAGTATGCAATGACCATCATGTGT
chr2:29570801-29570819
TCTAGGATAGAGCTTGATAATTTGCATTTT29570801TAATTATGCAAATTACATTGGTGCTGGTTCTGGGACTACACCTTAAGAA
chr2:30764654-30764672
AACCCCTGGATAATATGGTAAATGTGTGTG30764654TAACTTTGTAACTTCCATACAATTTTTCCCCTTTTACATTTTTACCAGT
chr2:34139893-34139911
TGCCTGGGATGCTTCAAATATTGGTTCTTT34139893TAATTTTGCAACATCCAAAAACAAGTTTGTAGAATGTGCTTCTAGATGC
chr2:41873702-41873720
TAAGCACCTTCCATGTGCTGGCTTGTGAAC41873702AAATTAAGCACCTTCCATAAGTCCAGTGACTTATTCTCTTGTCTCCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/TATGGAAGTTGCATAATTA
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : TATGGAAGTTGCATAATTA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.929 | 6.918 | search_minus_done; http://172.18.8.78:28018/match?q=TAATTATGCAACTTCCATA&k=3&no_gap=1&offset=0&limit=50
6.940 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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