GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-02 09:11:05, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:8936574-8936592
CCCCTGCCCCATCTCCAGGCCACCACTGTG8936574GTATACTTTGAGTATTTCAGTCATACTTTTAAAGGCAATTTTATTAGGG
chr1:26009863-26009881
CTGTTATATGTCTTGCCTGTGAAGCGTGTG26009863GTCCACGTTGAGTCTTCCAGCCACGTGTTAAGCTCCAGAGCCAATTCAG
chr1:26171829-26171847
TACCTGTAGCATAAAGTGTAGACTCACACT26171829GCACACATTGATGATTCCAGTTTACCTTTTTCTCTACTACCAAAAGCCC
chr1:34616884-34616902
ATGACCCCCAACCCAGGGCCACTGCACTAG34616884GTACTCAGTGAGTGTTCCATGAGCCAGTCCCAATGCTCCTAGGCAGACG
chr1:39034890-39034908
CTACATGCATGTGTTCAAAACACACAGCCA39034890GCACACATGGAGCATTCCACAGGGTGCACACAGGGATACACCTCACAGT
chr1:63986795-63986813
AAGATAGATCACACCCTCCCGTAAGTTATA63986795TTACACATTTAGTCTTCCAAATACATACCAAATAGTCACCATTTCAACA
chr1:72625323-72625341
TAAAGAACATAGAAGAATGCAAAGCTTTGC72625323TTAGACATTAAGTATTCCAACTTTCTTTGTGTCTGATACCATATATTTT
chr1:74232796-74232814
GGACACATGAGCCCTACTACAAAAGAACTT74232796GTACACAAAGAGTAGTCCAGTGCTGAGCTGCACAGCTGCAATTCTGGAC
chr1:76565545-76565563
CATAGATTCGTTTAGGAAGGACTAACATTT76565545TTACAAATTGAGTCTTCCAACCTAGGAATATGTTATATAGCTCCAAGTA
chr1:80454277-80454295
ATAGAAGATGGCTCATGTATTTCCTGCGGG80454277GTAGACATTGTTTATTCCAGAAGGACCACTCAGTATGTGAAAGTCATTT
chr1:80717061-80717079
AAGAATGCATGAATTAAAAAGATAGAATAT80717061GTACACATTTATTATTCAATTTAATGTAAAAGTATGCAGCCCAACAAAA
chr1:90093405-90093423
TGAATAAATGAGACAATGCATATAAAGCTA90093405GCACACATTGAGCATCCCAAATCTGAGGTGCTCCAAATTTTCTGAACAC
chr1:92603223-92603241
CCTTTATTACAGATAAAAACTGTTAAAGCA92603223GTACAGATTGAGTATCCCTTATCTGAAATGCTTGGGATCAGAGTGTTTC
chr1:109002718-109002736
TTTGAAGACAAGCAAGTCAGCTTGGCTCTT109002718GTAGACAGTGAGTACTCCATTGTGAACATGATAAATCTCCAATTGGTGT
chr1:109212451-109212469
CTACAAATAACAAATTTCTACCACAGAAAA109212451GTACACGTTGAGTATCCCTAATTTGAAAAATACAAAATCTGAAACTTCT
chr1:111717594-111717612
ACCACCTTTTTGGCAATCTATGGTAACTTT111717594GTTCACATTGTGTATCCCATGTAATGCATGTTGTCTTTTGCTTGTGTTT
chr1:116172717-116172735
ATATATCCCCAGAGACTAGAATAGTAACTG116172717GTACACAGTGAGTGTTCAATAAATGTTTGTTGAATTAATTGTTGAATCA
chr1:119519665-119519683
TCTCATGTAATTCTCAAGTAATCCTTTAGT119519665GAACACATTTATTATTCCAATTTCATAGATGCAGAAACTAGGGTTGAGG
chr1:147291771-147291789
GTTGTGGAGAAAAACACCACAAACTTCTTA147291771GTACAGATTGAGTAATCCTAATCCAAAACTGAAATTCGAAATGTTCCAA
chr1:150359026-150359044
GGCACCTGCGGCTGGACACCTCAATCTGTG150359026GTACATATTGAGCAGTCCAACTTTTTTTGATAATGTCATGACTTTTCTT
chr1:155765325-155765343
TATATAATTATAATTTCTTAGTATAAAATA155765325GTACAGGTTGAGCATTCCAAATCCAAAACTCCAAAATCTGAAACTCTGT
chr1:158722810-158722828
AAATGAATAAAAGTGGAGAGGAAAGAGTGT158722810TTACTGATTGAGTATTCCAGAGAATCATGATCCTGGATGAAGTTTATTC
chr1:163841367-163841385
TTTTTACTCATAATTTCTTTGGATGGGAGG163841367GAACACAGTGAGAATTCCAAGCTGCTCTTAGGAGAAGTTCGGCTTTATG
chr1:164375979-164375997
GGTCTCCCTTCTTCGTGCTAAATGGTCCCT164375979ATACAAATTGAGTTTTCCATGAAAATATTCCAGACAGTGTGAAAAATCA
chr1:173971082-173971100
AACTGGTTACTAAGATCAGGAGTATTTTTA173971082GTATACATTGAGCATTCCAGTTTACTCATTACCCTCAAAAAATTTTACA
chr1:180071828-180071846
TCATTCTGAGCTCGGTTGCATCTACCTAAA180071828GTACACACTTAGTATTTCATTAACTTCAGGCCTTTAATGTAAACTCTCA
chr1:186521094-186521112
GTGTTCTTGGCTGACAGTTTTTTTTGTTCT186521094GTCCACATTGAATATTTCAACCCTTTCTTTTCTGGCCTGCAAATTTTCT
chr1:224314942-224314960
TTATGTTTGGCACGCTTATTTTTTCCACAA224314942GTATACATGGAGTTTTCCAGTAGCCACATGACGTTTGATGACATGATGG
chr1:226397879-226397897
TGGTTGAAAATAAATTAATACTTAAGTACT226397879GTACACATAGGGTGTTCCAAAGACTCAGACAGAGCAGTTAAATTTCCAG
chr1:230992796-230992814
GCAGGGGGAGTGCCTCACCAACACATAAGT230992796GTACACATTCAGCCTTCCAGACCCCGAGTGTGCGTTCTCTGTGCAGACG
chr1:232038516-232038534
TGTAGGCTTTGATTTGTCAGTCCTTGATAT232038516GTACACGTTGAGTATCCCTGTCTAAATCTCTGCGATCTGAAATGCTCCA
chr1:234844767-234844785
GGAGACGACATTTAAGCAGAGATCTGGAAG234844767ATACACAGTGAGAATTCCAGGGAAAGAGAGGAGGGAATCATTTGTGCAA
chr1:236084890-236084908
TATAAAAAGAGGAAATTTGGATACAGACAC236084890GTACACAGGGAGAATTCCACGTGAAGATGAAGGCAGAAATCAGAGTGAT
chr1:238332820-238332838
TTTAAACATCTTGGTTAAGAATTAACCCAC238332820ATACAGATTGAGTATTCCTAATCCAAAAAACCGAAATTCAAAATATTCA
chr1:239084976-239084994
AGATGAGGTATTATTCATGGCAACAGCGAT239084976GTACCCATTGAGTATTCAGTACTGAAGAAGCAATTGTCCAGTACTCAAT
chr1:241498304-241498322
AAAAATAATATCCATGGGGCAATTAATTTC241498304CTGCACATTGATTATTCCAATCTCCACACTAATAAGTGGGGCTAAACCA
chr2:8903409-8903427
ACTCCTGCTCTCTGCCTCTTAGGGTTAGAA8903409GTACAGGTTGAGTATTCCTTATCTGAAATGCTTGGGACTAGAAGTGTTT
chr2:16773331-16773349
GGTCTGGTAGAGGTAGAACAAGGACAGAGA16773331GTACAGGTTGAGTATTCCAATTTCAAAAACCTGAAATCTGAAACGCTCC
chr2:19288747-19288765
ATTTTCTTATCATAATTTTCTTAGCTATTT19288747TTACACATTGATTATTTCATAATGACTTTAAAAATATGTATCTAGTTTT
chr2:19398583-19398601
CCATTAAGTTTTGAGGTGGATTTTTACTTA19398583GTACAAGTTGAGTATTCCCTCTCAGAAATGCTTGAGACCAGAAGTTGAG
chr2:24546350-24546368
TGCTAAGTCACAGAAGCCAGACACCAAAGG24546350CTACATATTGTGTATTCCATTTATATGACATTCTGGAAAAGGCAGAACT
chr2:33543027-33543045
GCACCACTGGCTCCTTCCTTTCTCTTACAT33543027GTATAGATTGAGTATTCCTCATCTGTAAATCCAAAATCTAAAGCACTCC
chr2:33819323-33819341
TTAATAATTAGAACTGAATGCAACTAACAC33819323GTACACATTAAATATACCAGCATGCAAGCCATCATCCTCCACAAACTAA
chr2:36079725-36079743
CTTAGTAAGATGACATAGCAGTCATGAGTA36079725GTACACAGTGAGTATTTCCCTTCCTTGTCTCTTCCTAGCACATGGTAAT
chr2:39909265-39909283
TATTTTATGACTTACTTGGAGCATCAGGAA39909265GTACAGAATGAGTTTTCCAAATAGCTAAAACCTACCTCTCTGTGCATCA
chr2:41813663-41813681
ATATACAAAAATCAACTCAAGACGGATTGA41813663GTACACATTCAGTACTGCACATGTATCCCTGAACTTAAAAGTTAGAAAG
chr2:50433178-50433196
CTCCGTGAATATACTAAAAATCATTAAATT50433178GTACACATTGAGTAAATCACATTGTGTATGAATTATATCCTCATAAAAC
chr2:52866583-52866601
TAGTTCAGTTAGTCTTGAACAAGTATAAAG52866583GAACACATAGATTATTCCAAGCAAGGAGAATACCTTGATGGGTACAAAG
chr2:82817473-82817491
ATAAAAGAAAGTAATATTTGAGTCATGCAA82817473ATACACATTGATTAATCCAAGCTTGTCAGCTTTCATTCCTCTCATAAAA
chr2:87392884-87392902
TTAATAGTTCATCCTTTTTATTATTAGGTG87392884GTACAGATTGAGTATTTCTTATCTGAAATGCTTGGGACCAGAAGCGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/TGGAATACTCAATGTGTAC
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : TGGAATACTCAATGTGTAC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.575 | 6.565 | search_minus_done; http://172.18.8.78:28018/match?q=GTACACATTGAGTATTCCA&k=3&no_gap=1&offset=0&limit=50
6.587 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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