GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-06 03:20:53, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:45570562-45570580
TCTCCATCTGTACCAGAAACCACAGTTCAA45570562GAACAATGAGGCTTCCGAAGCCCAGGTATTCACTTACAGCGATAACCTT
chr1:48438276-48438294
CAATCTGAAAGAAGACCCTTACCAGAACCC48438276GAACATGCTGGCTTCCTGACCTCAGACTTCCAGCCTCTAGAACTGTGAG
chr1:74008252-74008270
TAATGCTAGAAAATGACCTTCATAAGCTAA74008252GAACATTATGGAATCCTAAAGCATTAATGATTCATATAAGATAAAAAGG
chr1:74061178-74061196
GGCTTCTGATAACCGTATCTCTGAGGAGGA74061178GAAAATGGTGGCTTCCTTAGAGTGAGAAAATCCACTGGCGCTCATAGGG
chr1:81055664-81055682
ACATTGTACTATTTAACAAGCTAATCCCAT81055664TAACATTTTGGCTTCTTAAACAGTTCCAAATGTGAAAAACCTAGGCAGA
chr1:85958032-85958050
AATATTAACAAGGAAGACTTAGGTTAAGTG85958032GAACATTGTGACTACCCAAATTGCAGCATTAGAAACAGTAATAGAAAAA
chr1:92086946-92086964
TACTCAGAGACTAAGCTTACCCCTTGTGAG92086946AAACATTGTTGCTTGCTAACATGTTTCCCTCCTTCCTCCTTTCCACCAC
chr1:96642766-96642784
GGAGTGAAATGCCACTTAAAATTTATTCGG96642766GTAAATTGTGGATTCCTAAGAAATGTGATCCAGGCTTTGAATTAGGCAT
chr1:102423291-102423309
AAGAGGCTGAATAATTAGGAAGTAAGAGAG102423291TAACAGTGTGGCTTCTTAAAAGGTTAGAGACTATTAAAATTGACAAATA
chr1:111317105-111317123
CCTGCACATAGGAATGCAAGTGTTGGCAGC111317105CATCACTGTGGCTTCCTAACAATTGTTCCCTCTTTCCTGACATTCTTCC
chr1:113450194-113450212
CACTGTGATGTGGGTGAGCGGCTGAGAGCT113450194GAACACTCTGGCTTCCTGAGGTAAATACTTGCAGCTGAATGATGATTAG
chr1:146707427-146707445
AAAATATTTTAGAGTAGGGTGAATCATGAG146707427AAACATTTTGGCTTCCTATGGTATATTATTGAGACAACCTGTCCCCTAC
chr1:152949387-152949405
CTACCCCACCCTCTCTAACCCCATCAGGGT152949387GAATCTTGTGGTTTCCTAATAAGCAGAGTACATACATGTGTTTGGGGCA
chr1:174993863-174993881
CTGTGCAACTGTCATCATTGCCCATCTCCA174993863GAACTTTGTGTCTTCCAAAACTAAAATACTCTACCATTAAACAATAAGT
chr1:191523248-191523266
TTTTTATGAGGCAGTTTATTCCCATTCTTT191523248TAAAAATGTGGCTTCCTAAGGCAAACAATTTTCTATAACAATGATAATT
chr1:206769042-206769060
ACTTGGCAAGAACATTAAATCACTATCCTT206769042GAACATTGTGTCTTTCTAAAATTACCTTTTTATTAGACGCTCTTTGTGC
chr1:207627373-207627391
TCTAGCATAACACAGCATGGCACAGAGGAC207627373GAACATTGTAGATTACTAAGGGTGAGTACTAACTTGTGAAAGTTTTGTT
chr1:212418379-212418397
AGACACCAGAAGGAGACGTAATTAAAAGCT212418379GAAGATGGTGCCTTCCTAAGGACCGGTGATACAGTTTGCATGTCCCTTC
chr1:220885209-220885227
TGTTGATTTCTCCAAAACTTAGGGAAGAAA220885209CAACTTTGTGGCTTCCAAATACAGTATTGGGTTCAGTGAAATCCCCCTC
chr1:222306480-222306498
AAGCAAATATTGCAATAAAGCAAGTCACGT222306480GAACATTTTGGTTTCCTAGCACATATAAAAGTTATATTTATACTGTACT
chr1:224028140-224028158
ATGTGTGGCTTAAGTGGCATGAGCTGAAAA224028140GAACACTCTGGATTCCTAAACTCTTAATTCCTGTTCTTCTTATTCTGTG
chr1:231409639-231409657
CAGATGGGCACTATACCCATTAACCTAGAT231409639GAACATTATGGCTTCCTCTTCCCTTCTAGGACTTTGAAGAAGGCTGTTA
chr1:240347842-240347860
GGCCTGTTTTTTTTTTTTTTTTTTTTTTAA240347842GAACATTCTGGTTTCTTAATTTTAAGGATGGGTGAAGGAGGTGGCCATT
chr1:240483762-240483780
ACCAGGTACTTAGCACAGAAGACAAATGAG240483762GAAAATTGTAGCTTCCTCACATATCTGAAAGAGATTTTGAAATGACCCT
chr1:243671252-243671270
GCATGTCACTGCAGCTGTTTGTAGAAAATG243671252GAACATTTTGCCTTTCTAACTGCTGATTTGTTCTAAACAATAACTGTAT
chr2:2583881-2583899
GGACCATGGGTTTCATCTCTGCAATAACTG2583881GCACAATGTGGCTTCCTAAGCAACATACAAGGAGGGCGTATGTCTGGGA
chr2:13064143-13064161
AACAGAGAACACTATAGCTCAAAAGTGGTG13064143GAAAGTTTTGGCTTCCTAACCACCAACCATTTCTTCTCTGCCTATTCGT
chr2:31787226-31787244
GTCTCCTTTATTTCTCAATGTTTGCAAAAA31787226GAAAATTGTGGTTTTCTAAGTTCAGTTGTTTAGCTTCTTAGTGCAGCCC
chr2:34133906-34133924
CTAAACTGTATGTTCTACATGGTGCTGACA34133906GACCATTTTGGCTTCTTAATTGGTTATTCAGTTGCCTTCATATTGACAA
chr2:44418088-44418106
GTGCAGCTTATTTGAATAGTCTTGCAGCAT44418088GAACATTTTTGCTTCTTAACATAAGGATCCATGTTCTCATCACTAAGAT
chr2:46418217-46418235
TAAGGGATGCTAGAAAACTATTTTCTCAAG46418217GAAAATGGTGGCTTCTTAATTAGCATAAAGAATGTTAGAAAGGTGACAT
chr2:57289648-57289666
TGGCATGCCACTTCTGAGATTAGGTTAGTA57289648GAGCATTGTGGCTTCCTTCTTGAGCAAGTTACCTGGTTTCCCCCTTGGA
chr2:60689978-60689996
AGTGAGAAACTTGGACAAGGTGACCCAAGG60689978AAACTTTTTGGCTTCCTAAATCCCAGCTTTCTATTCCCCCCTGGGTGAC
chr2:68264859-68264877
ATCATAACTGACAGTATGTTAGAAAGGTCT68264859GAACATTTTGGCTTCAGAAAGAGTATAACAGACCCTTGACATTTCAAGG
chr2:78862031-78862049
GTATTTCTAAAATGTTAGGGTAATATAAGG78862031GAACATTTTTGCTTCCAAAATCCTACAGAGTTCAGAATATCAGCTGATA
chr2:85901929-85901947
TGGCTGATTCAGGCCCCAGCATGGTGCTGG85901929GAACACAGTGGCTGCCTAATCAACCAACTGCCATTCCCTCTTTCTTCCT
chr2:105507497-105507515
GCAGCCCTGAGCGAGTTCCCTCACTTATCT105507497GAACCTTGAGGCTTCCTATCTGTAAGCTGGAGAAAGTAGGCTCTACCCC
chr2:117781604-117781622
TTTAGGCTATATACAACTATGCAAAGGACT117781604GAACATTGTAGGTTCCTACGAGATGCTTCAACCATTCAGTGATGCAATA
chr2:127313668-127313686
TTAATGCTACCCATTGTCATGATGGGCCAA127313668GAACATTGTGGCTTCTTAAGTTAGAAAATGCCATATACCAAAATTTTAA
chr2:128132840-128132858
AGAAAATAACCCTATGGGACCCATAGCCCC128132840GAACAATGTGGCTTCATCAGACAACACAGGCCCCGGACAGGATGCTCAA
chr2:134562751-134562769
ATATTACTGAGGCCTTTGTCAGACCCAAGG134562751GATCAATGTGGCTTCCAAATGCCAAGTAGAAAGAACTTGAAGATTTAAT
chr2:147785367-147785385
ATTTGAGGAATTGCAGCCTCAACATTCAAA147785367GAACATTGGGGCTACATAAATCCACACTGAAGACATAATAAATAGTTTA
chr2:157421709-157421727
GAGAGCTTCAAGAGTTGGAACCAAATTCCT157421709GATCAGTGTGGCTACCTAAGGAATTTCACAGACACTAGAGGGACTGTGG
chr2:158277825-158277843
ACTCAGTAAATAATGGTTGAATGAATACGT158277825GAAAATAATGGCTTCCTAAAACAACTCTCAGCTATCACACATTTGTTCC
chr2:164013742-164013760
GCCTCAGGAGAAACTATTTTATCAGAGCCC164013742AAACATTGTGGCTAACTAACATGGTGAAAGAGAAATATCCAACTCCAGC
chr2:192716829-192716847
TGTCAAGAACACAGGTAGGAAGACACATTA192716829GAACATTGTTCCTTCATAAGTCATTCATTTAACAAATATTATTGAGTAA
chr2:223119318-223119336
ATCAGTGTCATAATTACTTAGGATGCAAGA223119318GAACATTGTGGCTAGCTAGAACTACCAAAAGATCCCTTAGAGAGAGTTA
chr2:223478840-223478858
GGACACTGAAATTGAACTGAAAAGAACTGA223478840AAACATTCTGGCTTCCAAATTTACAAAATGAAAAATCATAAATTTGATT
chr2:230031295-230031313
GGAACAGACTAAGAAATAAATTCTGACCTC230031295TAACATGGTGCCTTCCTAAGAGATTCCCAAGTAAAATTTTGACTCTACA
chr2:235035564-235035582
CCCACGTTGGGAGGGCTAGGGGAGAGTGAT235035564GAACTTTGGGCCTTCCTAACTGAGAAGAAATCGTCTGCAGAGCTGACTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/TTAGGAAGCCACAATGTTC
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : TTAGGAAGCCACAATGTTC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.244 | 6.234 | search_minus_done; http://172.18.8.78:28018/match?q=GAACATTGTGGCTTCCTAA&k=3&no_gap=1&offset=0&limit=50
6.256 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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