GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-08 17:08:55, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:17932346-17932364
TTCAGGGGCCTCCACTGCAATAACAGGACA17932346ATCAGCCTGGCCTTCTGAAGGTCGCAGCTGCTCCACTCTCTAAAGACAT
chr1:21487066-21487084
CAACTTAACCAAGTAGTCAAGGTAATCATC21487066ATCATACTGACATCATGAATCTCCTGATATGGGGCAATGAGAAGGAATG
chr1:26658291-26658309
GAGGTCAGACCTAAGAAAAGACTGAATGAA26658291ATCATACTGCCCCTATGGAGGGGAATTTGGCAATATTAGGCAAAACTCC
chr1:35141303-35141321
ACACTATCATTGTCAAGATTTAGTGTTAAA35141303ATTATACTGGCTTTATAAAATGGGTTGGGGCATATTTGTATTTCCTCTT
chr1:40475173-40475191
AATAATAAAATAATAATAAAGAATGACTGG40475173ATCATATGGGCCTTATGGAAATTCTATGTTTAACTTTTTGAGGAAGTAC
chr1:44997947-44997965
AATGCGGCTGGAAGTCACATTAGCTGCTGA44997947CTCATACTGACCTTATCAACTAAAACCCCTACCTTGTCTCATTGCTGAG
chr1:61958741-61958759
CTGAGGCAATCGGATCAACTCCAGATTTCT61958741ATCATACAGGCCTTCTGACTTGAAGAGCCCGGAGCATATGCCTCGGCAC
chr1:65956873-65956891
CCTAACAAAGTCTTTGTTGCTGGCAGGGAG65956873ATCAGCCTGGCCTTAAGAATCTGCTTCTGCTAGTTCAGATGGGAAGTGA
chr1:68989293-68989311
GTTTCCTTCCACATTTCTTATTCTTTAGGG68989293ATCATTCTGCCCTTGTGAAATATAAATACCATCTCTGTTAAATTCATTA
chr1:69701690-69701708
TGGAGGTGTTTATCACAGTATTAAAGGTCT69701690ATTATACTGGCCTTAACAATACCCCTTGCGGTCATGTTAAGTTCACATA
chr1:69715591-69715609
CCGACCAGAACTCCCTTGCTCTTTATCAGC69715591AACATACTGGCCTGAGGAAAAGAGGGCAGAAAGAAAGGGAATCCCTCAC
chr1:70132001-70132019
TATTGATGTATCTTTGGGTTTGGTATCAAG70132001ATAATACTGGCCTTGTGAATGAGTCTGAAAGTATTCCTTCCTCCTCTAT
chr1:72529795-72529813
AACTTTCTTCTTGCATTTGTTTTACTCAGA72529795ATCATACTGGCCAGAAGAATGGGGCTTTTAAGTCGGATGCAGAGAAGTG
chr1:75605897-75605915
CAATATTTCATGTTCCTATTTAGAAAGTAT75605897AAAATACTGGCCTTATTAAACACCATCTTATGTTTTACTACTTGAAGTG
chr1:81186450-81186468
GTGTTTTCTTTGTCTGGATTTGCTATCAGG81186450ATAATACTGGCCTCATAAAATAAGTTATAAAAATACCTTCACCTTCAAT
chr1:82260421-82260439
ATTGTTTGGTCTAGGATCTAAGTGATTGAT82260421TTCATACTGACCTTAAGAATGCATTGTAAAGAGTTTCAATAAGTTGAAA
chr1:89698456-89698474
TTTTCGTTGTGTCTCTGCCAGGTTTTGATG89698456ATGATGCTGGCCTTATCAAATGAGTTAGGGAGAAGTCCCACCTTTTCAA
chr1:92898816-92898834
GTTGTGTCTCTGCCAGGCTTTGGTATCAGG92898816ATGATGCTGGCCTTATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTA
chr1:93454042-93454060
TAATGTCTTTGTCTGGTTTTTGGTATCAGG93454042ATAATACTGGCCTTATAGAATTATTTGGGGGAAAATTCTCTACTTTTCA
chr1:94975043-94975061
GTTGTGTCTCTGCCTGGCTTTGGTATCAGG94975043ATGATGCTGGCCTCATGAAATGAGTTAGGGAGGATCCCCTCTTTTTCTA
chr1:99343650-99343668
GTTGTGTCTCTGCCAGGCTTTGGTGCCAGG99343650ATGATACTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTCCTA
chr1:100727624-100727642
CCCCAAGTTGTCTTTGGTTTTGGCATCAAG100727624ATCATACTAGCCTTATAAAATGTACTGGGGAGGTCTATTTCATGAGTTC
chr1:105756759-105756777
GTTGTGTCTCTGCCCGGCTTTGGTATCAGA105756759ATGATGCTGGCCTTATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA
chr1:106488426-106488444
GTTGTGTCTCTGCCAGGCTTTGGTATCAGG106488426ATGATACTGGCCTCATAAAATGAGTTAGGGAGGCTTCCCTCTTTTTCTA
chr1:114018348-114018366
GTTGTGTCTCTGCCAGGCTTTGGTATTAGG114018348ATCATGCTGGCCTCATAAAATGAGTTAGGGAGGATTTGCTCTTTTTCTA
chr1:115329445-115329463
GTTGTGTCTCTGCCATGTTTTGGTATCAGG115329445ATGATGCTGGCCTTATAAAATGAGTTAGGGATGAGTCCCTCTTTTTCTA
chr1:121342491-121342509
GTTGTGCCTCTGCCAGGCTTTGGTATCAGG121342491ATGATGCTGGCCTCATGAAATCAGTTAGGGAGGATTCCCTCTTTTTCTA
chr1:143523149-143523167
GTTTTGTCTCTGCCAGGCTTTGGTATCAGG143523149ATGATACTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTA
chr1:159730494-159730512
GTTGTGTCTCTGCCCTGCTTTGGTATCACA159730494ATGATGCTGGCCTTATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTA
chr1:166770781-166770799
GTTGTGTCTCTGCCAGGCTTTGGTATCAGG166770781ATGATACTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTA
chr1:174349425-174349443
GTTGTGTCTCTGCCTGGCTTTGGTATCAGA174349425ATGATGCTGGCCTTATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTA
chr1:180291491-180291509
TTTTGATCTTTGTCTGGTTTTGGTATCATG180291491ATAATACTGGCCTTATAGAATGAGTTTGGAAGTCTTCCCTCCTCAATTT
chr1:180831805-180831823
AGATTATAAACTTCTAAGGGGTGCCTTTAA180831805ATCATACTGTACTTATTAACACATTAATATAACCTAAAAGTGGTTAATG
chr1:181572232-181572250
GTAAATGAATCAGAGGTAAATGAATCTTAA181572232AACCTACTGGCCTTAAGAATTGGAAGGCCCCTTGCTTATATCCTTGGGG
chr1:183917045-183917063
CTATTAAAGTCAAGAATGAAAGAGGGGTCA183917045CTCCTACTGACCTTATGAAAGTAAAAAAGATTATATGATAATACTATGA
chr1:186478025-186478043
TGTGTGTTTCTGCTAGGTTTTCATATCATG186478025ATGATACTGGCCTCATAAAATGAATTATGGGGGATTCCCTCTTTTTCTA
chr1:187641609-187641627
GTATGAAACCAGTGACAAGGGCTTGACATG187641609ATCATACTAGTCTTTTGAAAAATCCACTTTGCTTGTATTCTGAATAACT
chr1:187914156-187914174
TAATAGTTTGCTTAATTTCTATATAAGTAA187914156ATCATGTTGGCCTTATTAAAAATGACAGTTAATGGATGTTGCTAGCATA
chr1:192865697-192865715
TTTAATTTTTTGAGAAACCTCCATACTTTC192865697ATCATACTGGCTATAGGAATTTACATTCCCACCAACAATGTGTGAATTC
chr1:194798832-194798850
GTTGTGTCTCTGCCAGGTTTTGGTATCAGG194798832ATGATGCTGGCCTTATGGAATGTGTTAGGGAGGAGTCACCCCTCAATGT
chr1:198445397-198445415
TGTTGTGTCCTGCCAGGTTTTGGTATTAGG198445397ATGATGCTGGCCTCATGAAATGAGTTAGGGAGGATTCCCTCCTTTTCTT
chr1:198723070-198723088
TCTCTTCTCCAAATCTTGGTTTCCTTATCT198723070ATCATACTGGCATTCTGATATTGGTTTCAACAACTTCAGATGTAAATAA
chr1:213531476-213531494
GTTGTGTCTCTGCCAGGCTTTGGTATCAGG213531476ATGATGCTGGCCTCATGAAATGAGTTAGGGAGGATTCCCTCTTTTTCTA
chr1:215873648-215873666
GTCGTGTCTCTGCCAGGTTTTGGTATCAGG215873648ATGATGCTGGCCTTATAAAATGAGTTAGGGAGGAGTTCTTCTTTTTCTA
chr1:217063700-217063718
TGTTGAGTTGGGGTGTTTTATAAAGCCCAT217063700ATCATTTTGTCCTTATGAATGAACTTTGATAGATTAATGAGCCTAGTCA
chr1:225449341-225449359
GTAATGTTCTTTTCTGGCTTTGGTATTAGG225449341ATAATGCTGGCCTTGTGAAATTAGTTTGGCAGTATTCCCTCCACTTCAA
chr1:229195933-229195951
CTTACAGTTTTTCCCAGTGCTACTATGATA229195933ATCATCATGGCCTGATGAAGGTTAGAGTTCTAATTTATTAATAGTTTCC
chr1:231432287-231432305
TTGTCCTCATAGTATTACTAATCTGGCTTT231432287ATCCACCTGGCCTTATGAAACTCCTGGCCTTACCCAGTCTTAATTTTCT
chr1:232705619-232705637
GGATCCTCTAAAGATCCATTCAAGTCTAGA232705619ATTCTACTGGCCTTACGAAACTGACCATAAAATAAAAAAGTGCAGGATC
chr1:238202912-238202930
GTTGTGTCTCTGCCCGGCTTTGGTATCAGG238202912ATGATGCTGGCCTTATAAAATGAATTAGGGAGGATTCCCTCTTTTTCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/-/nogap/TTCATAAGGCCAGTATGAT
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : TTCATAAGGCCAGTATGAT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.039 | 6.029 | search_minus_done; http://172.18.8.78:28018/match?q=ATCATACTGGCCTTATGAA&k=3&no_gap=1&offset=0&limit=50
6.051 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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