GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-21 23:45:31, GGGenome : RefSeq human RNA release 220 (Sep, 2023)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

PREDICTED: Homo sapiens membrane associated guanylate kinase, WW and PDZ domain containing 2 (MAGI2), transcript variant X11, mRNA
XM_011516720.4:40090-40104
TATATTTGTTATAGAATATTATGTTAAATC40090TTCATTGACAACATTAAAGAGTCATACCTTTTATGGGTGTTAGTT
PREDICTED: Homo sapiens membrane associated guanylate kinase, WW and PDZ domain containing 2 (MAGI2), transcript variant X12, mRNA
XM_017012847.3:40090-40104
TATATTTGTTATAGAATATTATGTTAAATC40090TTCATTGACAACATTAAAGAGTCATACCTTTTATGGGTGTTAGTT
PREDICTED: Homo sapiens membrane associated guanylate kinase, WW and PDZ domain containing 2 (MAGI2), transcript variant X11, mRNA
XM_054359445.1:40148-40162
TATATTTGTTATAGAATATTATGTTAAATC40148TTCATTGACAACATTAAAGAGTCATACCTTTTATGGGTGTTAGTT
PREDICTED: Homo sapiens membrane associated guanylate kinase, WW and PDZ domain containing 2 (MAGI2), transcript variant X12, mRNA
XM_054359446.1:40148-40162
TATATTTGTTATAGAATATTATGTTAAATC40148TTCATTGACAACATTAAAGAGTCATACCTTTTATGGGTGTTAGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/hs_refseq220/TTCATTGACAACATT
lang : ja | db : hs_refseq220 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.75:28958/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.007 | search_minus_done; http://172.18.8.75:28958/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.091 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).