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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-09-01 05:33:34, GGGenome : RefSeq human RNA (NM/NR) release 215 (Nov, 2022)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens LOC105373289 (LOC105373289), transcript variant 6, long non-coding RNA
NR_168385.1:3091-3098
TTTGAACTAAATGTCTTCACGTATTAGGGA3091TGTTTTAAGGTTCTTGTAAGTTTGGATGCATCTTGCTG
Homo sapiens LOC105373289 (LOC105373289), transcript variant 5, long non-coding RNA
NR_168384.1:3134-3141
TTTGAACTAAATGTCTTCACGTATTAGGGA3134TGTTTTAAGGTTCTTGTAAGTTTGGATGCATCTTGCTG
Homo sapiens LOC105373289 (LOC105373289), transcript variant 1, long non-coding RNA
NR_168380.1:3094-3101
TTTGAACTAAATGTCTTCACGTATTAGGGA3094TGTTTTAAGGTTCTTGTAAGTTTGGATGCATCTTGCTG
Homo sapiens promoter of MAT2A antisense radiation-induced circulating long non-coding RNA (PARTICL), long non-coding RNA
NR_038942.1:1398-1405
AGGAGAATGCCAATTTATTAACTTACAATG1398TGTAATAAAATTGTCAACTGGAAAAAAAAAAAAAA
Homo sapiens ankyrin repeat domain 20 family member A8, pseudogene (ANKRD20A8P), non-coding RNA
NR_003366.2:1170-1177
CTTAAAACAAGAAAATGAAGAAAAAACAAA1170TGTTAATATGCTGTACAAAAAAAATAGAGAAGAATTAG
Homo sapiens ankyrin repeat domain 20 family member A8, pseudogene (ANKRD20A8P), non-coding RNA
NR_003366.2:1181-1188
AAAATGAAGAAAAAACAAATGTTAATATGC1181TGTACAAAAAAAATAGAGAAGAATTAGAAAGGAAAGAG
Homo sapiens ankyrin repeat domain 20 family member A8, pseudogene (ANKRD20A8P), non-coding RNA
NR_003366.2:1899-1906
TCTCAGAAAAAAGTCATTGGCTTTAGAAAC1899TGTACAAAATGACCTAAGAAAAACACAGCAGCAAACAC
Homo sapiens ITPRIP like 2 (ITPRIPL2), transcript variant 2, non-coding RNA
NR_028028.2:2134-2141
GGCTAATGTTTAGAGGAACATAATTTCCAC2134TGTTCAAATTAATATTAATGTATTTTTAAAATGGTGCA
Homo sapiens ITPRIP like 2 (ITPRIPL2), transcript variant 2, non-coding RNA
NR_028028.2:2627-2634
TGGCTGCTGGCTGGAGACAGAAAACTTTTT2627TGTTTTAAGGTTTTTAGCAAACTCCTTCACAAAGAGAT
Homo sapiens ITPRIP like 2 (ITPRIPL2), transcript variant 2, non-coding RNA
NR_028028.2:4065-4072
AGCAGTGTCAGTGAGTTCCTCTTTTAATAG4065TGTTTTAAAGTATAAATCTGGTAACATACTGTTCTTGT
Homo sapiens ITPRIP like 2 (ITPRIPL2), transcript variant 2, non-coding RNA
NR_028028.2:4847-4854
GGGTGTGAGAGAGGTTTGGGTTAGGAAACA4847TGTTTTTAGTGCTATTTCCAACCAGGGGTCGCAAACTC
Homo sapiens CPS1 intronic transcript 1 (CPS1-IT1), long non-coding RNA
NR_002763.2:482-489
ACATACGTTCTGATTTTTGGACAAATTCAA482TGTTTTAATTGAATAGTTTTCGTTACAACCAGAAGGCA
Homo sapiens CPS1 intronic transcript 1 (CPS1-IT1), long non-coding RNA
NR_002763.2:699-706
TCAATCTCCATTTTCTGGCATAAATATATT699TGTAAATAGGGATATTTTCTATTGTTCATAATGATCTA
Homo sapiens CPS1 intronic transcript 1 (CPS1-IT1), long non-coding RNA
NR_002763.2:721-728
AATATATTTGTAAATAGGGATATTTTCTAT721TGTTCATAATGATCTACATTTAAAACTCTTTATGTAAA
Homo sapiens CPS1 intronic transcript 1 (CPS1-IT1), long non-coding RNA
NR_002763.2:811-818
TCAAAAACTTACACTTAAAATCATCTCTAC811TGTATAAATTTGTTTTTGATCCAGGGAGGTTGAAGTGT
Homo sapiens CPS1 intronic transcript 1 (CPS1-IT1), long non-coding RNA
NR_002763.2:1361-1368
GGCTGAGAAGATTAGTTGTTCTTTTTCATT1361TGTATTTATTTATGGTTTACTTTGAAGATCTCAACTGC
Homo sapiens CPS1 intronic transcript 1 (CPS1-IT1), long non-coding RNA
NR_002763.2:1879-1886
TTTTCCCCTGAAAATAAAAATGCTACTTGT1879TGTAATAAAGGTTACTTTATGATTTTAGATATGTATTA
Homo sapiens ZNF205 antisense RNA 1 (ZNF205-AS1), transcript variant 2, long non-coding RNA
NR_024167.1:871-878
GGCATGTGCCACCACACCTGGCTAATTTTG871TGTTTTTAGTAGAGATGGGGTTTCTCCATGTCGGTCAG
Homo sapiens ZNF205 antisense RNA 1 (ZNF205-AS1), transcript variant 1, long non-coding RNA
NR_024166.1:876-883
GGCATGTGCCACCACACCTGGCTAATTTTG876TGTTTTTAGTAGAGATGGGGTTTCTCCATGTCGGTCAG
Homo sapiens killer cell immunoglobulin-like receptor 3DS1-like (LOC112268355), mRNA
NM_001368254.1:1325-1332
GGCCCAAGACACCCCCAACAGATACCAGCA1325TGTACATAGAACTTCCAAATGCTGAGCCCAGATCCAAA
Homo sapiens PRAME family member 13 (PRAMEF13), mRNA
NM_001291380.1:549-556
CAAGGATGGGAGAGCACCAGCCCTTAAAGG549TGTTCATAGACATCTGCCTCAAGGAAATACCCCAGGAT
Homo sapiens SACS antisense RNA 1 (SACS-AS1), long non-coding RNA
NR_103450.1:521-528
ACTGTATCACCGCAACACCAAACTGAGCTG521TGTTCTAACAGCATTTAGTCAACTGCAGACGGTTTTTG
Homo sapiens SACS antisense RNA 1 (SACS-AS1), long non-coding RNA
NR_103450.1:865-872
TTGACCCACAGTAGGAAAACTTGGCACTAC865TGTACATATGATCTCATTTAAGGAGTAGGAAGATAAAC
Homo sapiens SACS antisense RNA 1 (SACS-AS1), long non-coding RNA
NR_103450.1:1000-1007
CAGGAGACTGGGGACTTAAATCATAACTAT1000TGTATAAATAATGGGAGCTGTTCCCTGAGCTAAACGCC
Homo sapiens SACS antisense RNA 1 (SACS-AS1), long non-coding RNA
NR_103450.1:2011-2018
AAGGAGAGTGCTACTGATCTTTTGTGTGTG2011TGTAATAAAGATTTCGATGTAAAATGTACAACAGAAAA
Homo sapiens septin 7 pseudogene 14 (SEPTIN7P14), non-coding RNA
NR_037630.1:612-619
TGTCAGATGCCTGGTAACAGGGTGCAGTGT612TGTTTATACTTCATTGCTCCTTCAGGACATGGACCATT
Homo sapiens septin 7 pseudogene 14 (SEPTIN7P14), non-coding RNA
NR_037630.1:823-830
GTTTGGAGAAAATCTTGAGGACGTGATCAC823TGTACAAAAGCATGGCAAAATGAGGAAACCACTGACAG
Homo sapiens RNA, 45S pre-ribosomal N1 (RNA45SN1), ribosomal RNA
NR_145819.1:4474-4481
CCCGAAGCGTTTACTTTGAAAAAATTAGAG4474TGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCT
Homo sapiens LIMS1 antisense RNA 1 (LIMS1-AS1), long non-coding RNA
NR_149074.1:45-52
GGGAGCCATGAATCATGCTGAAAACAGGAT45TGTTCAAAACTTTGCCAGGAAGTCTCTGGCAGAAGTGT
Homo sapiens SCTR antisense RNA 1 (SCTR-AS1), transcript variant 2, long non-coding RNA
NR_147847.1:1415-1422
TGGGAGTAATAATAGTGCTTATTGCACAGT1415TGTTTTAAGAACTAAAAATTTAAATTGCCTAGAATGTT
Homo sapiens MLIP antisense RNA 1 (MLIP-AS1), long non-coding RNA
NR_046710.1:503-510
CTGTATTTCCAAATTTAGAGTTATTTGGGT503TGTATATAGGTCAGATAATTTACTTTTTTGTTTTCAAC
Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA
NR_003682.1:1985-1992
TTCCGGACATATGCATCATTGTTGTTGCAG1985TGTTAAAACAAGAGCTAGAAAACTGACAATGTCGTCTG
Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA
NR_003682.1:2813-2820
TTCATAGTCTTTTGTGAATCATTGCCTTTT2813TGTTTAAAAAGATGGCCTATTTTGAGCCTTTGTATAAG
Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA
NR_003682.1:2998-3005
GTAAAGGTGGACATTCTAATTACATTAAAA2998TGTAATTAGAAAAAAGTGCTTAATGAACAAAAACAGAA
Homo sapiens L3MBTL2 antisense RNA 1 (L3MBTL2-AS1), long non-coding RNA
NR_148200.1:191-198
TTCGACATCAGCTAGCACCAAGTTCCATCA191TGTAAATAAACTGAAGGGCTTCAGACCGGGAGTGAAGC
Homo sapiens L3MBTL2 antisense RNA 1 (L3MBTL2-AS1), long non-coding RNA
NR_148200.1:1022-1029
ACCAAGGGTGTCAGACTCCCCCATAGTTCT1022TGTTTAAAATGTACTGAATACACCAGACTCTGGGGGAT
Homo sapiens L3MBTL2 antisense RNA 1 (L3MBTL2-AS1), long non-coding RNA
NR_148200.1:1839-1846
GATAGGAGCTGCTCTCACTGCCCACACTGC1839TGTTATAACTCCGGAAACTATCATAGCCACCAAACAGC
Homo sapiens RNA, 45S pre-ribosomal N3 (RNA45SN3), ribosomal RNA
NR_146151.1:4451-4458
CCCGAAGCGTTTACTTTGAAAAAATTAGAG4451TGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCT
Homo sapiens RNA, 18S ribosomal N1 (RNA18SN1), ribosomal RNA
NR_145820.1:820-827
CCCGAAGCGTTTACTTTGAAAAAATTAGAG820TGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCT
Homo sapiens RNA, 18S pre-ribosomal N4 (RNA18SN4), ribosomal RNA
NR_146119.1:820-827
CCCGAAGCGTTTACTTTGAAAAAATTAGAG820TGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCT
Homo sapiens ankyrin repeat domain 20 family member A12, pseudogene (ANKRD20A12P), non-coding RNA
NR_046228.1:1565-1572
TTTAGGGTTTCATTTGTCTAGCGTAATTCT1565TGTTTATAATTTGGTGAAACACTGAGTTGTTCTGTTGA
Homo sapiens TALAM1 transcript, MALAT1 antisense RNA (TALAM1), antisense RNA
NR_145459.1:852-859
CAAAGTCCGTACCCTACTTGAAGATTATGC852TGTAATTATGGGTGCTGTGTTTATAGACCACAGATTTA
Homo sapiens TALAM1 transcript, MALAT1 antisense RNA (TALAM1), antisense RNA
NR_145459.1:869-876
TTGAAGATTATGCTGTAATTATGGGTGCTG869TGTTTATAGACCACAGATTTAACAGAACAAGCCCACAG
Homo sapiens TALAM1 transcript, MALAT1 antisense RNA (TALAM1), antisense RNA
NR_145459.1:1082-1089
AAAAGACAAGGCAGTTATATTAGGTTCTCG1082TGTAAATATGAATATACAATCAAGTCAAGCTCCTGACA
Homo sapiens TALAM1 transcript, MALAT1 antisense RNA (TALAM1), antisense RNA
NR_145459.1:1136-1143
TCAAGCTCCTGACAAATTATACATCAAGGA1136TGTATATAGTTCAAAGATATTGTGCTGTTACCTCCCAC
Homo sapiens TALAM1 transcript, MALAT1 antisense RNA (TALAM1), antisense RNA
NR_145459.1:2388-2395
CTATTGTCCCATAACTGATCTGACTTTGTA2388TGTAAATACAGAAAAAGCTTGTTCACCTGTTTTCCTCA
Homo sapiens TALAM1 transcript, MALAT1 antisense RNA (TALAM1), antisense RNA
NR_145459.1:2689-2696
ACATAAACAATGCACTAAAGATCACTGAAC2689TGTTTAAACATTTCCACTTGCCAGTTTAATTTCTTGAA
Homo sapiens TALAM1 transcript, MALAT1 antisense RNA (TALAM1), antisense RNA
NR_145459.1:3109-3116
AGTCAAGACAACTGCATTCTCTGTGAAGTC3109TGTAAAAAAAAAAAAAGCTACAACAAGTAAGCCCCACC
Homo sapiens TALAM1 transcript, MALAT1 antisense RNA (TALAM1), antisense RNA
NR_145459.1:3493-3500
ATAGACCCCTGACTTTCTGGAAATAAAATG3493TGTAATTACCTTTTACTCTGATCATAATCTCCCACCTG
Homo sapiens TALAM1 transcript, MALAT1 antisense RNA (TALAM1), antisense RNA
NR_145459.1:6410-6417
ATCAAATTCATTTGGTTTTCCTCAAATTCG6410TGTAAAAAAAAAAAACCCACAAACTTGCCATCTACTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/hsnm_refseq215/+/UGUWHWWA
lang : en | db : hsnm_refseq215 | k : 0 | strand : + | nogap : | query_string : UGUWHWWA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
1.052 | 1.042 | search_plus_done; http://172.18.8.75:28931/match?q=TGTWHWWA&k=0&no_gap=0&offset=0&limit=50
1.088 | 0.036 | cgi_end;

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