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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 15:51:22, GGGenome : RefSeq human RNA (NM/NR) release 215 (Nov, 2022)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens LOC105373289 (LOC105373289), transcript variant 6, long non-coding RNA
NR_168385.1:2039-2045
TGGGTTTCACCATGTTGGCTAGGCTGGTCT2039TGAACTCCTGACCTCAGGTGATCCACCCACCTCAGCC
Homo sapiens LOC105373289 (LOC105373289), transcript variant 5, long non-coding RNA
NR_168384.1:2082-2088
TGGGTTTCACCATGTTGGCTAGGCTGGTCT2082TGAACTCCTGACCTCAGGTGATCCACCCACCTCAGCC
Homo sapiens LOC105373289 (LOC105373289), transcript variant 1, long non-coding RNA
NR_168380.1:2042-2048
TGGGTTTCACCATGTTGGCTAGGCTGGTCT2042TGAACTCCTGACCTCAGGTGATCCACCCACCTCAGCC
Homo sapiens ACVR2B antisense RNA 1 (ACVR2B-AS1), long non-coding RNA
NR_028389.1:2123-2129
AGGGTTTCATCATGTTGGCCAGGCTGGTCT2123TGAACTCCCAACTTCAGGTGACCTGCCTGCCTCAGCC
Homo sapiens CPS1 intronic transcript 1 (CPS1-IT1), long non-coding RNA
NR_002763.2:925-931
ATGATCCACGGCGTTAGCAAACCTAAACCC925TGAACTCATTATCTGAGTGTCACTTTATGGTTTAATT
Homo sapiens PRAME family member 13 (PRAMEF13), mRNA
NM_001291380.1:850-856
CTCCAGGTGCCATCATTCCACGTCAGATAA850TGAACTCGAAGGACGGTTAGTCACCAAATTCAGCTCT
Homo sapiens MLIP antisense RNA 1 (MLIP-AS1), long non-coding RNA
NR_046710.1:456-462
GAAAGGCTCTGCAGCTAATCTCAAGTGCAG456TGAACTCTGTTTCATTACTGTATTTCCAAATTTAGAG
Homo sapiens myogenin promoter associated myogenic regulatory antisense long non coding RNA (MYOPARR), long non-coding RNA
NR_160550.1:1905-1911
CTACTTGGGAGGCTGAGGCAGGGAATTACT1905TGAACTCAGGAGGAGGAGGTTGCAGTGAGCCGAGTTC
Homo sapiens TARDBP pseudogene 3 (TARDBPP3), non-coding RNA
NR_026923.1:2512-2518
GCAGGAGGACTTGGAAGCAGAGTTCAGCAG2512TGAACTCTGGTGTCTCAAAGAAGGGTAGAAGTTCTAA
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 5, non-coding RNA
NR_149144.3:803-809
GGGTAGGAGCCAAACAGCATGAATTACAAG803TGAACTCAATGCAGCTGCTGTACTACCAGGCTCCGAT
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 5, non-coding RNA
NR_149144.3:8567-8573
AGGGTATCACCATGTTGGCCAGGCTGGTCT8567TGAACTCCTGACCTCAGGTACTCCGCCCACCTCAGCC
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 5, non-coding RNA
NR_149144.3:15513-15519
TGCAGGCACAATCATAGTGCACTGCAGCCC15513TGAACTCCTTGGCTCAAGTAATCCTCCTGCCTCAGCC
Homo sapiens transmembrane and ubiquitin like domain containing 2 (TMUB2), transcript variant 25, non-coding RNA
NR_148386.2:394-400
GGTGGCAGGCCAAGGCAACCCCGAGCCAAC394TGAACTCCCCCATCCATCAGAGGCAAATACTTCCCTG
Homo sapiens transmembrane and ubiquitin like domain containing 2 (TMUB2), transcript variant 26, non-coding RNA
NR_148390.2:884-890
GGTGGCAGGCCAAGGCAACCCCGAGCCAAC884TGAACTCCCCCATCCATCAGAGGCAAATACTTCCCTG
Homo sapiens transmembrane and ubiquitin like domain containing 2 (TMUB2), transcript variant 27, non-coding RNA
NR_148388.2:485-491
GGTGGCAGGCCAAGGCAACCCCGAGCCAAC485TGAACTCCCCCATCCATCAGAGGCAAATACTTCCCTG
Homo sapiens transmembrane protein 107 (TMEM107), transcript variant 6, non-coding RNA
NR_147092.2:801-807
AATAATAGGATTGCTCATACCAGCGCGTTA801TGAACTCACCCTAGCTTGTAACGGAATCTTTTTCACT
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 4, non-coding RNA
NR_149143.3:806-812
GGGTAGGAGCCAAACAGCATGAATTACAAG806TGAACTCAATGCAGCTGCTGTACTACCAGGCTCCGAT
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 4, non-coding RNA
NR_149143.3:8570-8576
AGGGTATCACCATGTTGGCCAGGCTGGTCT8570TGAACTCCTGACCTCAGGTACTCCGCCCACCTCAGCC
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 4, non-coding RNA
NR_149143.3:15516-15522
TGCAGGCACAATCATAGTGCACTGCAGCCC15516TGAACTCCTTGGCTCAAGTAATCCTCCTGCCTCAGCC
Homo sapiens suppressor of IKBKE 1 (SIKE1), transcript variant 3, non-coding RNA
NR_049741.2:766-772
TGGACACTGCTTCCCAAGCCATCAAATAAC766TGAACTCTGAATGATGGCTGGAGATTGTCTATCAAGG
Homo sapiens suppressor of IKBKE 1 (SIKE1), transcript variant 4, non-coding RNA
NR_049742.2:598-604
TGGACACTGCTTCCCAAGCCATCAAATAAC598TGAACTCTGAATGATGGCTGGAGATTGTCTATCAAGG
Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), transcript variant 17, non-coding RNA
NR_168117.1:257-263
GCACGATTGTAGCTCACTGCAGCCTCAAAC257TGAACTCCTAGGCGTAAGCGATTCTCTCACCTCAGCC
Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), transcript variant 19, non-coding RNA
NR_168120.1:166-172
GCACGATTGTAGCTCACTGCAGCCTCAAAC166TGAACTCCTAGGCGTAAGCGATTCTCTCACCTCAGCC
Homo sapiens transmembrane p24 trafficking protein 10 pseudogene 1 (TMED10P1), non-coding RNA
NR_002807.4:3319-3325
GGAGTTTCACCGTGTTGGCCGGGATGGTCT3319TGAACTCCTGACCTCAAGTGATCCACTGACCTCAGCC
Homo sapiens inositol polyphosphate-5-phosphatase J (INPP5J), transcript variant 3, mRNA
NM_001002837.2:385-391
CAGACATGATCGCCATAGGGTTGCAGGAAG385TGAACTCCATGCTCAACAAGCGACTCAAGGACGCCCT
Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 4, non-coding RNA
NR_047674.1:2866-2872
GTTCAGTGCATGAACCGTTATTGATCCGAA2866TGAACTCTAAAGACAATGTACAAGAGACTCAAATCTA
Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 3, non-coding RNA
NR_047673.1:2919-2925
GTTCAGTGCATGAACCGTTATTGATCCGAA2919TGAACTCTAAAGACAATGTACAAGAGACTCAAATCTA
Homo sapiens NHL repeat containing 3 (NHLRC3), transcript variant 3, non-coding RNA
NR_073109.1:2061-2067
TTTTTTTCTTTTTCTTTCTTTTGTTTTACA2061TGAACTCAACTTATTCCTAACATTTGTCTACCTCAAA
Homo sapiens uncharacterized LOC375196 (LOC375196), long non-coding RNA
NR_028386.1:992-998
TGAATCTGGATGAGGGCATGTGGAGTTCAC992TGAACTCTTCTATGTAAATTTGAAATTTTCATAATAA
Homo sapiens AADACL2 antisense RNA 1 (AADACL2-AS1), transcript variant 2, long non-coding RNA
NR_110203.1:388-394
CAGAAGAGACTCATGGAAACTGAGTGGTCT388TGAACTCCTGGCCTCAAGTAATCCTCCCCACTGGGCT
Homo sapiens DLGAP1 antisense RNA 5 (DLGAP1-AS5), long non-coding RNA
NR_036489.1:2140-2146
CCACTGGCTGATTCTCTGACCATCCCCAGC2140TGAACTCCTCCTAACAGTCCTTCTCTTCTTTCCTCTG
Homo sapiens TMEM51 antisense RNA 1 (TMEM51-AS1), long non-coding RNA
NR_027136.1:6663-6669
GACACAGCTGTTAGCGGCAGAATCAAGATC6663TGAACTCAGGCTTCTGACACTCCAAAGTCTTGATCTT
Homo sapiens MYRF antisense RNA 1 (MYRF-AS1), long non-coding RNA
NR_026882.1:666-672
CAGAGTCAACCATTCAATCTAGTCCAAGCC666TGAACTCTTGGGTTCTGGGTCTGTGGGGTGTCCAGAA
Homo sapiens killer cell lectin like receptor A1, pseudogene (KLRA1P), non-coding RNA
NR_028045.1:945-951
ATCATCCCTTTTGAAGATAGATGACAAAGA945TGAACTCGTATTTTACATTCACTTTTATTCTCTTGGA
Homo sapiens long intergenic non-protein coding RNA 2731 (LINC02731), long non-coding RNA
NR_027276.1:745-751
CCAAGTTGAAGAGATGAAGGCGCAGAGGCA745TGAACTCCCGTAGCCAGAGAGTGTGAGCTGGACTCTA
Homo sapiens KIAA0087 lncRNA (KIAA0087), long non-coding RNA
NR_022006.1:3037-3043
GGGGTTTCACCATCTTGGCCAGGCTGGTCT3037TGAACTCCTGACCTTGTGGTCCACCCGCCTCGGCCTC
Homo sapiens PRKAR2A antisense RNA 1 (PRKAR2A-AS1), transcript variant 2, long non-coding RNA
NR_109997.1:1856-1862
GGGGTTTCACCATATTGGCCAGGCTGGTCT1856TGAACTCCTGACCTCAGGTGATCCGCCTGCCTCAGCT
Homo sapiens DiGeorge syndrome critical region gene 11 (DGCR11), long non-coding RNA
NR_024157.1:185-191
GGGGTGACAGGCAGCATTCACAAATGAACT185TGAACTCAAGTGTGGCTGTTTGTTCACAAGTCACCAC
Homo sapiens dynamin 1 pseudogene 41 (DNM1P41), non-coding RNA
NR_033787.2:3196-3202
GCCAGCTCTGGCCACTAAGGGACAGGGCCC3196TGAACTCAGCCTGGAGGGAACCTGCGGGGCAGCCGGC
Homo sapiens long intergenic non-protein coding RNA 933 (LINC00933), transcript variant 1, long non-coding RNA
NR_038273.1:2258-2264
TGTATGTTGGCCAGGCTGGTCTCAAACTCC2258TGAACTCAAGTGATCTGCCCGCTTCAGCCCCCAAGTG
Homo sapiens collagen type VI alpha 4 pseudogene 2 (COL6A4P2), non-coding RNA
NR_027898.1:3244-3250
AGGGTTTCACCATGTTGGCCAGGCTGGTCT3244TGAACTCCTCACCTCAGGTGATTCTCCTGCCTCGGCC
Homo sapiens OTU deubiquitinase 7A pseudogene (LOC100288637), transcript variant 1, non-coding RNA
NR_038253.1:3983-3989
TGAGGTCTCCCTCTCTCTGTAGAGTGGCTG3983TGAACTCCAGCCCTGCCCTGATGGGGCTCCAGGGGAG
Homo sapiens heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 (HNRNPA1P10), non-coding RNA
NR_002944.2:1094-1100
ACAGGGAAGCTACAGGTTACAATAGATTTG1094TGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCT
Homo sapiens olfactory receptor family 4 subfamily N member 3 pseudogene (OR4N3P), non-coding RNA
NR_028067.1:407-413
TCTGCCTGCCTCTGCAGTATTCAACTGTCA407TGAACTCTAGAGCCTGCTATGCAATGATGTTGGCTCT
Homo sapiens uncharacterized LOC441369 (FLJ46284), long non-coding RNA
NR_046114.1:1773-1779
TACAAAACAGAAGTGAAATTATGGACCCAG1773TGAACTCAATCTGGCTGACTTGCAACCCCTATGTGTT
Homo sapiens S-phase kinase associated protein 1 pseudogene 2 (SKP1P2), non-coding RNA
NR_036619.1:682-688
ATTTCTGAAAGTTGACCAAGGAACACTTTT682TGAACTCATTCTGGCTGCAAACTACTTAGACATCAAA
Homo sapiens ribosomal protein L13a pseudogene 17 (RPL13AP17), non-coding RNA
NR_003680.1:440-446
CTCTTCAAAGAAGACAGGATAGTATAATTA440TGAACTCAGTCTCTGTAGTCATGATGCTCACATCCAA
Homo sapiens AADACL2 antisense RNA 1 (AADACL2-AS1), transcript variant 1, long non-coding RNA
NR_110202.1:448-454
AACAGTAACAAGTATAAAACAAAGTGGTCT448TGAACTCCTGGCCTCAAGTAATCCTCCCCACTGGGCT
Homo sapiens GABPB1 intronic transcript (GABPB1-IT1), long non-coding RNA
NR_026891.1:2800-2806
GTCTCTGTTTGCAAGTAGCCTGAGTTCAGA2800TGAACTCACTGATGGCCTCCATCTCTTCTGACTTTGC
Homo sapiens uncharacterized LOC101928401 (LOC101928401), long non-coding RNA
NR_108099.1:2222-2228
ACCATGTTGGCCAGGCTGGTCTCAAACTCC2222TGAACTCGTGATCCACCCACCTCGGTCTCCCAAAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/hsnm_refseq215/-/GAGUUCA
lang : en | db : hsnm_refseq215 | k : 0 | strand : - | nogap : | query_string : GAGUUCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.152 | 0.143 | search_minus_done; http://172.18.8.75:28931/match?q=TGAACTC&k=0&no_gap=0&offset=0&limit=50
0.187 | 0.034 | cgi_end;

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