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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-03 20:53:48, GGGenome : RefSeq human RNA (NM/NR) release 215 (Nov, 2022)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens ACVR2B antisense RNA 1 (ACVR2B-AS1), long non-coding RNA
NR_028389.1:1999-2005
GATCTCGGCTCACTGCGACCTCCACCTCCT1999GAGTTCAAGTGATTCTCCTGCCGCAGCCTCCCAAGTA
Homo sapiens chitinase, acidic pseudogene 2 (CHIAP2), non-coding RNA
NR_003928.2:2211-2217
GCCCCCTAAAAGAATAAGTAACCTTCTTGT2211GAGTTCATGATAATGAAAAATTTCAATCAGTAAGATG
Homo sapiens ITPRIP like 2 (ITPRIPL2), transcript variant 2, non-coding RNA
NR_028028.2:3777-3783
AGGCGAGGTGGGCGGATCACCTGAGGTCAG3777GAGTTCAAGACCAGCCTAGCCAACATAGTGAAACTCT
Homo sapiens long intergenic non-protein coding RNA 2888 (LINC02888), transcript variant 2, long non-coding RNA
NR_110015.1:847-853
GGCAATGTATTGAGTATGCTGATAGAGGTG847GAGTTCAGAGACAGGCAAGCATACATAAGAGTCAGGA
Homo sapiens long intergenic non-protein coding RNA 2888 (LINC02888), transcript variant 1, long non-coding RNA
NR_110014.1:915-921
GGCAATGTATTGAGTATGCTGATAGAGGTG915GAGTTCAGAGACAGGCAAGCATACATAAGAGTCAGGA
Homo sapiens regenerating family member 1 gamma, pseudogene (REG1CP), non-coding RNA
NR_002714.1:534-540
CTGAAGCCCTCACTCTATCCTCATGCATAT534GAGTTCACTTGAGAAAAAGCAGAGTCAAGTTCAGGGG
Homo sapiens ubiquitin specific peptidase 17 like family member 30 (USP17L30), mRNA
NM_001256867.1:1345-1351
TTCCTTCAAGAGCAAAACAAAACGAAGCCT1345GAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTC
Homo sapiens ubiquitin specific peptidase 17 like family member 26 (USP17L26), mRNA
NM_001242328.1:1345-1351
TTCCTTCAAGAGCAAAACAAAACGAAGCCT1345GAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTC
Homo sapiens ubiquitin specific peptidase 17 like family member 1 (USP17L1), mRNA
NM_001256873.1:1345-1351
TTCCTGCAAGAGCAAAACAAAACGAAGCCT1345GAGTTCAACGTCGGAAAAGTCGAAGGTACCCTGCCTC
Homo sapiens ubiquitin specific peptidase 17 like family member 25 (USP17L25), mRNA
NM_001242326.1:1345-1351
TTCCTTCAAGAGCAAAACAAAACGAAGCCT1345GAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTC
Homo sapiens ubiquitin specific peptidase 17 like family member 29 (USP17L29), mRNA
NM_001242332.1:1345-1351
TTCCTTCAAGAGCAAAACAAAACGAAGCCT1345GAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTC
Homo sapiens ubiquitin specific peptidase 17 like family member 28 (USP17L28), mRNA
NM_001242331.1:1345-1351
TTCCTTCAAGAGCAAAACAAAACGAAGCCT1345GAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTC
Homo sapiens ubiquitin specific peptidase 17 like family member 27 (USP17L27), mRNA
NM_001242330.1:1345-1351
TTCCTTCAAGAGCAAAACAAAACGAAGCCT1345GAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTC
Homo sapiens RNA, 45S pre-ribosomal N1 (RNA45SN1), ribosomal RNA
NR_145819.1:8325-8331
AAGGGAAAGTTGAAAAGAACTTTGAAGAGA8325GAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG
Homo sapiens RNA, 28S ribosomal N1 (RNA28SN1), ribosomal RNA
NR_145822.1:401-407
AAGGGAAAGTTGAAAAGAACTTTGAAGAGA401GAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG
Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA
NR_003682.1:1037-1043
CGCTGTACCAGGCACTGAGGGAAGGCACGC1037GAGTTCAGAGCGTGGAGCAGATTGGCGAGGTGGCCTC
Homo sapiens RNA, 28S ribosomal N3 (RNA28SN3), ribosomal RNA
NR_146154.1:401-407
AAGGGAAAGTTGAAAAGAACTTTGAAGAGA401GAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG
Homo sapiens RNA, 45S pre-ribosomal N3 (RNA45SN3), ribosomal RNA
NR_146151.1:8292-8298
AAGGGAAAGTTGAAAAGAACTTTGAAGAGA8292GAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG
Homo sapiens RNA, 45S pre-ribosomal N4 (RNA45SN4), ribosomal RNA
NR_146117.1:8332-8338
AAGGGAAAGTTGAAAAGAACTTTGAAGAGA8332GAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG
Homo sapiens RNA, 28S ribosomal N4 (RNA28SN4), ribosomal RNA
NR_146118.1:401-407
AAGGGAAAGTTGAAAAGAACTTTGAAGAGA401GAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG
Homo sapiens myogenin promoter associated myogenic regulatory antisense long non coding RNA (MYOPARR), long non-coding RNA
NR_160550.1:1781-1787
GAGGCCAAGGCGGGTGGATCACGAGGTCAG1781GAGTTCAAGACCAGCCTGGCCAAGATGGTGAAACCCT
Homo sapiens TARDBP pseudogene 3 (TARDBPP3), non-coding RNA
NR_026923.1:2501-2507
TGGTGTGCTTTGCAGGAGGACTTGGAAGCA2501GAGTTCAGCAGTGAACTCTGGTGTCTCAAAGAAGGGT
Homo sapiens uncharacterized LOC100507412 (LOC100507412), long non-coding RNA
NR_038958.1:338-344
GGTGGAGTTTCGCTCTTATTGCCCAGGCTG338GAGTTCAGTGGCGCGACCTCAGCTCACCGCAACCTCT
Homo sapiens long intergenic non-protein coding RNA 423 (LINC00423), long non-coding RNA
NR_047020.1:279-285
CACCTCCACAGTGGGCTGTGAAAATTAATT279GAGTTCAGGCTGTGAAAAACTTAAGCTGCTACATGAA
Homo sapiens uracil phosphoribosyltransferase homolog (UPRT), transcript variant 2, non-coding RNA
NR_030774.1:1027-1033
TTGAAGCTGTAAAGGTTCTTATAGAACATG1027GAGTTCAACCCAGTGTTATCATCCTACTCAGTCTGTT
Homo sapiens family with sequence similarity 120A opposite strand (FAM120AOS), transcript variant 3, non-coding RNA
NR_136229.2:417-423
CTTACTGTGCACCCGAAAAATAAATCCTGC417GAGTTCACGCCCGCGTAGTTCGCCCCCTGATTTTGAG
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 5, non-coding RNA
NR_149144.3:2589-2595
GGTTGAGGCAGGCAGATCACCTGAGGTTGG2589GAGTTCAAGACCAGTCTGACCAACATGGAGGAATCCC
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 5, non-coding RNA
NR_149144.3:5344-5350
AGCTGAGGTGGGCAGATCACCTGAGGTCAG5344GAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCTT
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 5, non-coding RNA
NR_149144.3:7922-7928
GGCCAAGCTGGGTGGATCTCTTGAGCTCAG7922GAGTTCAAGACCAGCCTGGGCATCATGGCAAAACCCT
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 5, non-coding RNA
NR_149144.3:14013-14019
ATGCTGCTTATCTAGAATCTGCTAGAAATG14013GAGTTCACCCAAAGAATGACCATCACAGAATTTATGA
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 5, non-coding RNA
NR_149144.3:16041-16047
GGCCAAGGCAGGAGGTGCACTTGAGGCCAG16041GAGTTCAAGACCTGAGCAACACAGCAAGACCCCCGTC
Homo sapiens transmembrane and ubiquitin like domain containing 2 (TMUB2), transcript variant 25, non-coding RNA
NR_148386.2:1034-1040
ATCTTCCTTCACTTTTAGGGTCCTCTGAAG1034GAGTTCAAAGCTGCTGGCCAAGCTCAGTGGGGAGCCT
Homo sapiens family with sequence similarity 120A opposite strand (FAM120AOS), transcript variant 10, non-coding RNA
NR_136236.3:3847-3853
GGCCGAGGCGGGTGGATCACCTGAGGTCGG3847GAGTTCAAGACCAGCCTGACAAACATGGAGAAACCCT
Homo sapiens family with sequence similarity 120A opposite strand (FAM120AOS), transcript variant 10, non-coding RNA
NR_136236.3:4421-4427
GGCCAAGACGGGTGGATCACCTGAAGTCAG4421GAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCT
Homo sapiens transmembrane and ubiquitin like domain containing 2 (TMUB2), transcript variant 26, non-coding RNA
NR_148390.2:1524-1530
ATCTTCCTTCACTTTTAGGGTCCTCTGAAG1524GAGTTCAAAGCTGCTGGCCAAGCTCAGTGGGGAGCCT
Homo sapiens transmembrane and ubiquitin like domain containing 2 (TMUB2), transcript variant 27, non-coding RNA
NR_148388.2:1125-1131
ATCTTCCTTCACTTTTAGGGTCCTCTGAAG1125GAGTTCAAAGCTGCTGGCCAAGCTCAGTGGGGAGCCT
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 4, non-coding RNA
NR_149143.3:2592-2598
GGTTGAGGCAGGCAGATCACCTGAGGTTGG2592GAGTTCAAGACCAGTCTGACCAACATGGAGGAATCCC
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 4, non-coding RNA
NR_149143.3:5347-5353
AGCTGAGGTGGGCAGATCACCTGAGGTCAG5347GAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCTT
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 4, non-coding RNA
NR_149143.3:7925-7931
GGCCAAGCTGGGTGGATCTCTTGAGCTCAG7925GAGTTCAAGACCAGCCTGGGCATCATGGCAAAACCCT
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 4, non-coding RNA
NR_149143.3:14016-14022
ATGCTGCTTATCTAGAATCTGCTAGAAATG14016GAGTTCACCCAAAGAATGACCATCACAGAATTTATGA
Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 4, non-coding RNA
NR_149143.3:16044-16050
GGCCAAGGCAGGAGGTGCACTTGAGGCCAG16044GAGTTCAAGACCTGAGCAACACAGCAAGACCCCCGTC
Homo sapiens suppressor of IKBKE 1 (SIKE1), transcript variant 3, non-coding RNA
NR_049741.2:3662-3668
TTGAGATGCCTAAATGCCAAATACTGTTGG3662GAGTTCAAGTGGTTCTTGATTAGCAAAATCTATTTTT
Homo sapiens suppressor of IKBKE 1 (SIKE1), transcript variant 4, non-coding RNA
NR_049742.2:3494-3500
TTGAGATGCCTAAATGCCAAATACTGTTGG3494GAGTTCAAGTGGTTCTTGATTAGCAAAATCTATTTTT
Homo sapiens leucine rich repeat containing 20 (LRRC20), transcript variant 9, non-coding RNA
NR_103468.2:1999-2005
GGAGGTCAAGACAGGATCTCCAGAGCTACC1999GAGTTCATCTGTGGGTGTTGGGGGCAAGTGGGGGCTG
Homo sapiens neuronal vesicle trafficking associated 1 (NSG1), transcript variant 8, non-coding RNA
NR_167933.1:246-252
AAAGGGAAAGCACGTCCTCCCCAAATTGCT246GAGTTCACCGTCAGCATCACGGAGGGTGTCACCGAGA
Homo sapiens trypsin like peroxisomal matrix peptidase 1 (TYSND1), transcript variant 3, non-coding RNA
NR_073580.2:1563-1569
AAAGAATGCCTAAGGTGGGTGGCAGTTGGG1563GAGTTCAAGGGTGAATGAGGCCAGGGCAGCCCCCAGG
Homo sapiens trypsin like peroxisomal matrix peptidase 1 (TYSND1), transcript variant 10, non-coding RNA
NR_073595.1:2076-2082
AAAGAATGCCTAAGGTGGGTGGCAGTTGGG2076GAGTTCAAGGGTGAATGAGGCCAGGGCAGCCCCCAGG
Homo sapiens trypsin like peroxisomal matrix peptidase 1 (TYSND1), transcript variant 7, non-coding RNA
NR_073592.2:1683-1689
AAAGAATGCCTAAGGTGGGTGGCAGTTGGG1683GAGTTCAAGGGTGAATGAGGCCAGGGCAGCCCCCAGG
Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), transcript variant 17, non-coding RNA
NR_168117.1:912-918
GAAATTTCACAACTCCCAGGGGCTAATGTG912GAGTTCATTTTCACTTACTGCTGAATCAACTGAAGTT
Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), transcript variant 19, non-coding RNA
NR_168120.1:821-827
GAAATTTCACAACTCCCAGGGGCTAATGTG821GAGTTCATTTTCACTTACTGCTGAATCAACTGAAGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/hsnm_refseq215/-/UGAACUC
lang : en | db : hsnm_refseq215 | k : 0 | strand : - | nogap : | query_string : UGAACUC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.090 | 0.080 | search_minus_done; http://172.18.8.75:28931/match?q=GAGTTCA&k=0&no_gap=0&offset=0&limit=50
0.125 | 0.035 | cgi_end;

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