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2025-04-08 14:07:50, GGGenome : Schistosoma mansoni genome, ASM23792v2 (Apr, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

1 dna:chromosome chromosome:ASM23792v2:1:1:65476681:1
position: 17027244-17027258

AAGTTTATTAGGCTCATAATTCACAAAGCG17027244TTCATTGACAACATTTAAAATACAGTGCCTCTATAATGCAACTGA

4 dna:chromosome chromosome:ASM23792v2:4:1:32115376:1
position: 21725387-21725401

AGAAGAAGAAATTGAAAGTGAAGAATTCAA21725387TTCATTGACAACATTTCAATCATGTAATACTGAAAAGAATTTAAA

Chr_1.unplaced.SC_0135 dna:supercontig supercontig:ASM23792v2:Chr_1.unplaced.SC_0135:1:857621:1
position: 388970-388984

TCACGAAACTTAAACTACCTACTTGTCACA388970TTCATTGACAACATTCAGCTGAATGGTAATTTAACCGTTTTTTAC

Chr_5.unplaced.SC_0198 dna:supercontig supercontig:ASM23792v2:Chr_5.unplaced.SC_0198:1:459784:1
position: 174516-174530

GTATAATAATAATAATAATCTGAAAAAGAA174516AATGTTGTCAATGAATGCTTACACAACTAATGGTTGACTTTTAAA

SC_0013 dna:supercontig supercontig:ASM23792v2:SC_0013:1:3605463:1
position: 3455704-3455718

AATTTAGACGAAAGTTCTTATATTTAACTC3455704AATGTTGTCAATGAATAAAAAGAAATTGTCATCATTACTTGGCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.76:28158/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.006 | search_minus_done; http://172.18.8.76:28158/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.087 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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