GGGenome | Results

Help | Japanese

2025-04-08 20:35:13, GGGenome : Tetranychus urticae genome, ASM23943v1 (Nov, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

HE587335 dna:supercontig supercontig:GCA_000239435.1:HE587335:1:723144:1
position: 364696-364710

AAATGATTTCTATTGAAGGTGAAGACAAAA364696AATGTTGTCAATGAAAGGTCAAAGAATAATGAAAAGATTACTTTA

HE587304 dna:supercontig supercontig:GCA_000239435.1:HE587304:1:4539973:1
position: 10387-10401

TTTCATGAGCTGAGAGCGTTTTACCCTTTC10387AATGTTGTCAATGAAAATGCTGTTGAAAAGTTTAATGTAAACTGA

HE587335 dna:supercontig supercontig:GCA_000239435.1:HE587335:1:723144:1
position: 384242-384256

TAAAGTAATCTTTTCATTATTCCTTGACCT384242TTCATTGACAACATTTTTTGTCTTCACCTTCAATAGAAATCATTT

HE587313 dna:supercontig supercontig:GCA_000239435.1:HE587313:1:2175382:1
position: 1218914-1218928

TGATCTTGAATTGTAATGTTTCCAAATATA1218914TTCATTGACAACATTTACAGAAATACAAAAACAGTGTTTGAAATT

HE587313 dna:supercontig supercontig:GCA_000239435.1:HE587313:1:2175382:1
position: 1581782-1581796

ATTTAGAACTTTAATCAGCGTCGAGTAAAC1581782TTCATTGACAACATTTAACGATTCAATTTGGACGGAGTTGCTAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.76:28161/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.76:28161/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.088 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).