GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 12:09:44, GGGenome : Tetranychus urticae genome, ASM23943v1 (Nov, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

HE587335 dna:supercontig supercontig:GCA_000239435.1:HE587335:1:723144:1
position: 364696-364710
AAATGATTTCTATTGAAGGTGAAGACAAAA364696AATGTTGTCAATGAAAGGTCAAAGAATAATGAAAAGATTACTTTA
HE587304 dna:supercontig supercontig:GCA_000239435.1:HE587304:1:4539973:1
position: 10387-10401
TTTCATGAGCTGAGAGCGTTTTACCCTTTC10387AATGTTGTCAATGAAAATGCTGTTGAAAAGTTTAATGTAAACTGA
HE587335 dna:supercontig supercontig:GCA_000239435.1:HE587335:1:723144:1
position: 384242-384256
TAAAGTAATCTTTTCATTATTCCTTGACCT384242TTCATTGACAACATTTTTTGTCTTCACCTTCAATAGAAATCATTT
HE587313 dna:supercontig supercontig:GCA_000239435.1:HE587313:1:2175382:1
position: 1218914-1218928
TGATCTTGAATTGTAATGTTTCCAAATATA1218914TTCATTGACAACATTTACAGAAATACAAAAACAGTGTTTGAAATT
HE587313 dna:supercontig supercontig:GCA_000239435.1:HE587313:1:2175382:1
position: 1581782-1581796
ATTTAGAACTTTAATCAGCGTCGAGTAAAC1581782TTCATTGACAACATTTAACGATTCAATTTGGACGGAGTTGCTAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ASM23943v1/AATGTTGTCAATGAA
lang : en | db : ASM23943v1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.76:28161/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.005 | search_minus_done; http://172.18.8.76:28161/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.090 | 0.002 | cgi_end;

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