GGGenome | Results

2025-04-08 20:35:08, GGGenome : Aegilops tauschii genome, ASM34733v1 (Dec, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Scaffold179330 dna:supercontig supercontig:GCA_000347335.1:Scaffold179330:1:235:1
position: 73-87

ATGTTCTTCTGGTGTCCTTGAATATACCAG73AATGTTGTCAATGAACACCACAACAAATTTGTCCATGAATTTCAT

Scaffold94266 dna:supercontig supercontig:GCA_000347335.1:Scaffold94266:1:16541:1
position: 7657-7671

ATGAACAAGTTTGTGTTGGGGGAAGGCAAG7657AATGTTGTCAATGAAAACACAGTCATCGAGGGGCAAGGATGGTAT

Scaffold186768 dna:supercontig supercontig:GCA_000347335.1:Scaffold186768:1:23378:1
position: 8874-8888

TAGTACAAAATACTCAGCCTTTCTGCGGCA8874AATGTTGTCAATGAATAAACGAAGAGAATAGACAAGATTCCAGAC

Scaffold6481 dna:supercontig supercontig:GCA_000347335.1:Scaffold6481:1:61797:1
position: 40938-40952

CCGCCTTGGTGCACTCGACGCGGCGTGGTC40938AATGTTGTCAATGAACGACTTCCATCGGAAGAGTACTGTACGTGG

Scaffold40041 dna:supercontig supercontig:GCA_000347335.1:Scaffold40041:1:82371:1
position: 17244-17258

AACATCCGTGAAGAGACGCTTTCAGTTTTG17244AATGTTGTCAATGAAAAGATGTATAATAAAATGGGTGATCAGTTC

Scaffold76296 dna:supercontig supercontig:GCA_000347335.1:Scaffold76296:1:82425:1
position: 33692-33706

TATCATTGTTCAAACCGACTCATCGGAAGC33692AATGTTGTCAATGAAGGGGGACAGTCTTTGGTTTTCTACTTATGA

Scaffold73785 dna:supercontig supercontig:GCA_000347335.1:Scaffold73785:1:33658:1
position: 15354-15368

GAAACATGGTCATCATATGTTACGACATTT15354TTCATTGACAACATTGACATGTGAGTTCATTTTTAAGTTAATGGA

Scaffold48936 dna:supercontig supercontig:GCA_000347335.1:Scaffold48936:1:34801:1
position: 11230-11244

AAAGTAGCCCGTTGGTCTGCCATGTATTAG11230TTCATTGACAACATTCTGTACAGAAAAAGGCCGAACGGTGTGAAA

Scaffold35412 dna:supercontig supercontig:GCA_000347335.1:Scaffold35412:1:49007:1
position: 24359-24373

ATTATCAAACATTGATGAAGGCATTTTGGG24359TTCATTGACAACATTTGAATTTGACCCTAGTTGAGTTCATTTGGT

Scaffold35412 dna:supercontig supercontig:GCA_000347335.1:Scaffold35412:1:49007:1
position: 32618-32632

ATTATCAAACATTGATGAAGGCATTTTGGG32618TTCATTGACAACATTTGAATTTGACCCTAGTTGAGTTCATTTGGT

Scaffold26145 dna:supercontig supercontig:GCA_000347335.1:Scaffold26145:1:55800:1
position: 54942-54956

ATGAAATTCATGGACAAATTTGTGGTGGTA54942TTCATTGACAACATTCTGGTTTACTCGAGGACACCAGAAGAGCAT

Data Export:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.75:28166/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.094 | 0.010 | search_minus_done; http://172.18.8.75:28166/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=44
0.097 | 0.003 | cgi_end;