GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2021-04-23 16:40:43, GGGenome : Aegilops tauschii genome, ASM34733v1 (Dec, 2013)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Scaffold73785 dna:supercontig supercontig:GCA_000347335.1:Scaffold73785:1:33658:1
position: 15354-15368
GAAACATGGTCATCATATGTTACGACATTT15354TTCATTGACAACATTGACATGTGAGTTCATTTTTAAGTTAATGGA
Scaffold48936 dna:supercontig supercontig:GCA_000347335.1:Scaffold48936:1:34801:1
position: 11230-11244
AAAGTAGCCCGTTGGTCTGCCATGTATTAG11230TTCATTGACAACATTCTGTACAGAAAAAGGCCGAACGGTGTGAAA
Scaffold35412 dna:supercontig supercontig:GCA_000347335.1:Scaffold35412:1:49007:1
position: 24359-24373
ATTATCAAACATTGATGAAGGCATTTTGGG24359TTCATTGACAACATTTGAATTTGACCCTAGTTGAGTTCATTTGGT
Scaffold35412 dna:supercontig supercontig:GCA_000347335.1:Scaffold35412:1:49007:1
position: 32618-32632
ATTATCAAACATTGATGAAGGCATTTTGGG32618TTCATTGACAACATTTGAATTTGACCCTAGTTGAGTTCATTTGGT
Scaffold26145 dna:supercontig supercontig:GCA_000347335.1:Scaffold26145:1:55800:1
position: 54942-54956
ATGAAATTCATGGACAAATTTGTGGTGGTA54942TTCATTGACAACATTCTGGTTTACTCGAGGACACCAGAAGAGCAT
Scaffold179330 dna:supercontig supercontig:GCA_000347335.1:Scaffold179330:1:235:1
position: 73-87
ATGTTCTTCTGGTGTCCTTGAATATACCAG73AATGTTGTCAATGAACACCACAACAAATTTGTCCATGAATTTCAT
Scaffold94266 dna:supercontig supercontig:GCA_000347335.1:Scaffold94266:1:16541:1
position: 7657-7671
ATGAACAAGTTTGTGTTGGGGGAAGGCAAG7657AATGTTGTCAATGAAAACACAGTCATCGAGGGGCAAGGATGGTAT
Scaffold186768 dna:supercontig supercontig:GCA_000347335.1:Scaffold186768:1:23378:1
position: 8874-8888
TAGTACAAAATACTCAGCCTTTCTGCGGCA8874AATGTTGTCAATGAATAAACGAAGAGAATAGACAAGATTCCAGAC
Scaffold6481 dna:supercontig supercontig:GCA_000347335.1:Scaffold6481:1:61797:1
position: 40938-40952
CCGCCTTGGTGCACTCGACGCGGCGTGGTC40938AATGTTGTCAATGAACGACTTCCATCGGAAGAGTACTGTACGTGG
Scaffold40041 dna:supercontig supercontig:GCA_000347335.1:Scaffold40041:1:82371:1
position: 17244-17258
AACATCCGTGAAGAGACGCTTTCAGTTTTG17244AATGTTGTCAATGAAAAGATGTATAATAAAATGGGTGATCAGTTC
Scaffold76296 dna:supercontig supercontig:GCA_000347335.1:Scaffold76296:1:82425:1
position: 33692-33706
TATCATTGTTCAAACCGACTCATCGGAAGC33692AATGTTGTCAATGAAGGGGGACAGTCTTTGGTTTTCTACTTATGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/ASM34733v1/TTCATTGACAACATT
lang : ja | db : ASM34733v1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.084 | 0.077 | search_plus_done; http://172.18.8.75:28166/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.093 | 0.009 | search_minus_done; http://172.18.8.75:28166/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.096 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).