GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-24 14:19:13, GGGenome : Cross-reactivity check for COVID-19 diagnostic primers (7 CoV + 20 organisms in US EUA), NIHS 2020/5/1

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

NZ_CP009913.1 Streptococcus salivarius strain NCTC 8618 chromosome, complete genome
position: 336794-336808
AATTTGTGTTTTCATATAAAATCCTTTCAG336794AATGTTGTCAATGAATAAAATTGTTTAGCCAACTGAAATATCAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/COVID19-primercheck-EUA-20200501/TTCATTGACAACATT
lang : en | db : COVID19-primercheck-EUA-20200501 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.088 | 0.079 | search_plus_done; http://172.18.8.76:28832/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.092 | 0.004 | search_minus_done; http://172.18.8.76:28832/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.093 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).