GGGenome | Results

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2025-04-08 21:00:40, GGGenome : Citrus clementina genome, v1.0

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

scaffold_5:9679321-9679335

AGAACCAAAGCAAAAATGAAACATTTCTTC9679321TTCATTGACAACATTGCCATTTCCATTCTCATTATTTCTCTTAAA

scaffold_6:9816320-9816334

AGAACCAAAGCAAAAATTAAAGGTTTCTTC9816320TTCATTGACAACATTACCATTTCCACTCTTATTATTTCTCTTACA

scaffold_7:1953447-1953461

TACAATCGTTGGAAAACGACACCAACGATG1953447TTCATTGACAACATTTTTATGTCAAATCAGTCGCAAAGTGATCAA

scaffold_7:6302617-6302631

ATAACCAAAGCAAAAATTAAAGGTTTCTTC6302617TTCATTGACAACATTACCATTTCCACTCTTATTATTTCTCTTACA

scaffold_1:4071345-4071359

TTTAAGAGAAATAATGAGAGTGGAAATGGC4071345AATGTTGTCAATGAAGAAGAAATGTTTCATTTTTGCTTTGGTTCT

scaffold_2:8574206-8574220

TGTAAGAGAAATAATAAGAGTGGAAATGGC8574206AATGTTGTCAATGAAGAAGAAACCTTTCATTTTTGCTTTGGTTCT

scaffold_5:29448020-29448034

ATACCTTAGGATTAGACTTTGCAAATGGCA29448020AATGTTGTCAATGAAGTGTCCCGTAACAACCATGCAACCTTTCTT

scaffold_5:31550983-31550997

TGTAAGAGAAATAATAAGAGTGGAAATGGC31550983AATGTTGTCAATGAAGAAGAAACCTTTCATTTTTGCTTTGGTTCT

scaffold_6:1645577-1645591

CAACATGCTCTTTGTTTGTGAGTAGATCAA1645577AATGTTGTCAATGAACACCACTATGAATTTGTCTAGGTAGTCTTT

scaffold_8:15263131-15263145

TGTAAGAGAAATAATAAGAGTAGAAATGGC15263131AATGTTGTCAATGAAGAAAAAACCTCATCCAAAATTTTCCCTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.74:28294/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.007 | search_minus_done; http://172.18.8.74:28294/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.091 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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