GGGenome | Results

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2025-04-09 17:42:58, GGGenome : Carica papaya genome, ASGPBv0.4

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

supercontig_21:2160960-2160974

AGGCTTTGATAGTTTTTAATTGATTGTTTG2160960AATGTTGTCAATGAAGGTCCAGATTAGAAGGAAAAAAAAATCTAA

supercontig_34:309640-309654

GTATTACCTTTTCTTCCTTTTTAGCCATTC309640TTCATTGACAACATTTGGCTTGAAGAAGGCAGAAGATGCAAAATC

supercontig_34:334726-334740

GTATTACCTTTTCTTCCTTTTTAGCCGTTC334726TTCATTGACAACATTTGGCATGAAGAAGGCAGAAGATGCAAAATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.077 | 0.069 | search_plus_done; http://172.18.8.74:28293/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.081 | 0.003 | search_minus_done; http://172.18.8.74:28293/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=49
0.082 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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