GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-04-24 14:11:34, GGGenome : Rat genome, GRCr8, D3G 26.03 (Mar, 2026)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2 NC_086020.1
position: 6254083-6254097
AGGATAAGATTTAAGATTCAGTAAATATTT6254083AATGTTGTCAATGAAATCACACCTTGAACTCTGACCTTTCATTCA
chr2 NC_086020.1
position: 225659916-225659930
ATACCAAGTAAAAAAACAAAAAAACAAAAA225659916AATGTTGTCAATGAAGGTGTGGAAGAAAATTTTCCAAACCTAGTG
chr3 NC_086021.1
position: 52015818-52015832
CTACTTATTCATTCATGTATGTGGGTTTCA52015818AATGTTGTCAATGAACACTGCTGCTTCATCGAACACATGAAAAAT
chr5 NC_086023.1
position: 99982050-99982064
CATTGTCAACAGTTATACATTTGAAACTTT99982050AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA
chr6 NC_086024.1
position: 71679681-71679695
CCATAGATTAGTCATAGATAGCAGCTACTA71679681AATGTTGTCAATGAAGTTTCTACACAAATGGTAATTAGGCAATTT
chr7 NC_086025.1
position: 105226446-105226460
TCTCTTATGTATCCATTGTCCAATTTCTAG105226446AATGTTGTCAATGAACTGTGTCTTTGAGGCAGTTTCTTTTTGAGC
chr11 NC_086029.1
position: 90958400-90958414
TTATTCTCTTTAAAATTACACCAAAAGGAA90958400AATGTTGTCAATGAAAATTTAACAATAAGAAAAGAAGGTTAAAAA
chr2 NC_086020.1
position: 43718134-43718148
TTTTCAAAATCTTTTGCCTGTATAGACTTT43718134TTCATTGACAACATTAAACTGTATGACATGCAAAAAATAACAGGT
chr2 NC_086020.1
position: 58956173-58956187
CCTCTCCCATTTACATTTAGTTTTAAGTAA58956173TTCATTGACAACATTTTTTGCATTGTTCAGCCCTTTACCTGTATT
chr2 NC_086020.1
position: 61056057-61056071
CTGAACTTTCACCATAACAACCCATTAGGT61056057TTCATTGACAACATTCTATGGCAGCTATAGACCCCAACTCCAAAT
chr4 NC_086022.1
position: 162067470-162067484
AAACTGCGCTAAGCAAGACGGTATGGTATT162067470TTCATTGACAACATTAAAGAAAATAGAGAGATAGACACTCGTGTG
chr14 NC_086032.1
position: 30447348-30447362
GAAGCTAATAGTGCAATCGCCATGGTCTCC30447348TTCATTGACAACATTAACAGCTGTAATAAAATCAAGATATTGGCA
chr18 NC_086036.1
position: 23817125-23817139
ACATTCCTTACTCCTCTGACAGCAGTTTCT23817125TTCATTGACAACATTCAGGCTATCAGGCCTGATGTTGAGGTCCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/GRCr8_d3g2603/AATGTTGTCAATGAA
lang : en | db : GRCr8_d3g2603 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.72:29033/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.009 | search_minus_done; http://172.18.8.72:29033/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=43
0.095 | 0.004 | cgi_end;

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