GGGenome | Results

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2025-04-08 19:25:38, GGGenome : Hordeum vulgare genome, 082214v1 (Mar, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

1 dna:chromosome chromosome:082214v1:1:1:464124043:1
position: 152251787-152251801

GCATCCAAATAGGCAGAAACTTAGGAGAAT152251787TTCATTGACAACATTGAAGAAAGGGATAGAGCTGGTTTTTAGTAT

3 dna:chromosome chromosome:082214v1:3:1:564427874:1
position: 15026981-15026995

CCCATAGTTTTTTAACAACAACATATTTTT15026981TTCATTGACAACATTTTACACAGAGTATTGTGAAATGTCTCACAC

3 dna:chromosome chromosome:082214v1:3:1:564427874:1
position: 418615933-418615947

CGCTATGTAATGAGCTCCAACAATATTTTA418615933TTCATTGACAACATTTAGAGCCCATTTGGGACAGCTCTGCTCCTT

5 dna:chromosome chromosome:082214v1:5:1:561411686:1
position: 119548036-119548050

TTTGGCTCAGGTTTACCCTCTTGCCTATTT119548036TTCATTGACAACATTTGTCAGTATATCGCTTCTAATTTTACTCAG

4 dna:chromosome chromosome:082214v1:4:1:544168226:1
position: 281534574-281534588

TGATGCACCGCTAAGTGTGCCACCCCCTCC281534574AATGTTGTCAATGAACATTTTGAATGTGTGGCAGGCATGGTCTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.75:28177/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.006 | search_minus_done; http://172.18.8.75:28177/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.089 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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