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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-24 16:16:27, GGGenome : Musa acuminata genome, MA1 (Aug, 2012)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

1 dna:chromosome chromosome:MA1:1:1:27573629:1
position: 23858587-23858601
TGGTGTATAAGTACAATTTGTATATAATGA23858587AATGTTGTCAATGAATATGAATTAATGTATCATGTAAAAGCTTTA
4 dna:chromosome chromosome:MA1:4:1:30051516:1
position: 25133131-25133145
TCTTTTGAACAGAGAGTATGCCCCATTAAG25133131AATGTTGTCAATGAAATTGACCCCAGTGAGTTGCATGAGATCCTT
5 dna:chromosome chromosome:MA1:5:1:29377369:1
position: 24212756-24212770
ATAATGACTACGGTTGCTCATGTTTCAAAC24212756AATGTTGTCAATGAAGAGAAACTTAATTATTTTATTAGGACATCA
8 dna:chromosome chromosome:MA1:8:1:35439739:1
position: 6565042-6565056
ATCCCAAGTCAGACTCCCATCAATCAGAAC6565042AATGTTGTCAATGAACAATATACAGCACAGAAGTTCAATGATGAT
9 dna:chromosome chromosome:MA1:9:1:34148863:1
position: 18365428-18365442
TGTTGTATAAGCATATTTTGTATGTAATGA18365428AATGTTGTCAATGAATCAAAATGGATATACTGTGTAAAAGTGTTA
10 dna:chromosome chromosome:MA1:10:1:33665772:1
position: 4533677-4533691
TGTTGTATAAGTATATTTTGTGTGTAATGA4533677AATGTTGTCAATGAACCGAAATGGATATACCTTATAAAAATGTTA
10 dna:chromosome chromosome:MA1:10:1:33665772:1
position: 8717064-8717078
TTGTTATATAAGTGCATTTGTATCTAATGA8717064AATGTTGTCAATGAATAATTGTTGTATAATGTAAAAGTAAAGCTT
chrUn_random dna:chromosome chromosome:MA1:chrUn_random:1:141147818:1
position: 1763091-1763105
TATAAGTGCATTTTATATGAAATGAAATGA1763091AATGTTGTCAATGAATCTGAATTGATACATTGTGTAAAAGTGTTA
chrUn_random dna:chromosome chromosome:MA1:chrUn_random:1:141147818:1
position: 63840866-63840880
TGTTGTATAAGCATATTTTATATGTAATGA63840866AATGTTGTCAATGAATCGAAATGGTTATACTGTGTAAAAGTGTTA
chrUn_random dna:chromosome chromosome:MA1:chrUn_random:1:141147818:1
position: 66350704-66350718
TGTTGTATAAGAATATTTGGTATGTAATGA66350704AATGTTGTCAATGAATCGAAATGGATATACCTTGTAAAAGTGTTA
chrUn_random dna:chromosome chromosome:MA1:chrUn_random:1:141147818:1
position: 79355150-79355164
TGTTGTATAAGCATATTTTGTATGAAATGA79355150AATGTTGTCAATGAATCGAAATGGATATACTATGTAAAAGTGTTA
chrUn_random dna:chromosome chromosome:MA1:chrUn_random:1:141147818:1
position: 103841615-103841629
TGTTGTATAAGCATATTTTGTATGTAATGA103841615AATGTTGTCAATGAATCGAAATGGATATACTATGTAAAAGTGTTA
chrUn_random dna:chromosome chromosome:MA1:chrUn_random:1:141147818:1
position: 128737657-128737671
TATGGTATAAGCATATTTTGTATGTAATGA128737657AATGTTGTCAATGAACCAAAATGGATATATCTTGTAAAAGTGTTA
2 dna:chromosome chromosome:MA1:2:1:22054697:1
position: 221480-221494
TAACACTTTTACAAGGTATATCCATTTCAG221480TTCATTGACAACATTTCATTACATACAAAATATGCTTATACAACA
3 dna:chromosome chromosome:MA1:3:1:30470407:1
position: 24998806-24998820
TGAGTAAAAGTAGTTCCCAGTAACAGTCAT24998806TTCATTGACAACATTGATTCCATAAATTTTGCTTCTTTCTCAGTG
6 dna:chromosome chromosome:MA1:6:1:34899179:1
position: 9193103-9193117
GAACTCGTAGCGTATACTAACTACATTGTT9193103TTCATTGACAACATTAGTCCACCAGATCCTTCTTTCAAGACCGCA
10 dna:chromosome chromosome:MA1:10:1:33665772:1
position: 12672301-12672315
TAACACTTTTATATGGTATATCCATTTTGA12672301TTCATTGACAACATTTCATAACGTACAAAATATGCTTATACAATA
chrUn_random dna:chromosome chromosome:MA1:chrUn_random:1:141147818:1
position: 28896843-28896857
TAACACTTTTACATAATATATCCATTCAGA28896843TTCATTGACAACATTGTCATTACATAAAGAATATGCTTATTCAAC
chrUn_random dna:chromosome chromosome:MA1:chrUn_random:1:141147818:1
position: 73198684-73198698
TAACACTTTTACCTAGTATATCCATTTCGA73198684TTCATTGACAACATTTTATTTCATACAAAATATGCTTATACAACA
chrUn_random dna:chromosome chromosome:MA1:chrUn_random:1:141147818:1
position: 107206998-107207012
TAACACTTTTACACAGTATATCCATTTCGA107206998TTCATTGACAACATTTCATTACATACAAAATATGCTTATACAACA
chrUn_random dna:chromosome chromosome:MA1:chrUn_random:1:141147818:1
position: 126508316-126508330
TAACACTTTTACATAGTATATCCATTTCGA126508316TTCATTGACAACATTTCATTTCATATAAAATATGCTTATACAATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/MA1/AATGTTGTCAATGAA
lang : ja | db : MA1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.75:28180/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.096 | 0.013 | search_minus_done; http://172.18.8.75:28180/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=37
0.101 | 0.005 | cgi_end;

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