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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2021-12-01 12:20:33, GGGenome : Malus domestica genome, v1.0

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

MDC006112.286:482-496
AGGATGAAAACCTAATTACTCCTATTTATA482TTCATTGACAACATTGAGTTCAATCCAAATCTATAGTCCTAACAA
MDC011811.97:4486-4500
TTAGTTTATTTCACTCGAATCCAGCATAAG4486TTCATTGACAACATTGTTTGTGAAGCAGCATAATTAGATGGTATC
MDC018764.238:8582-8596
ACCTACACATTGGAGAAATTGGCACAGTTG8582TTCATTGACAACATTGTTAAACTTCATGGTGTACCGGTCACTATT
MDC001332.392:21690-21704
GTGTTGGTCTTTCTCTGCCAATATCTTTTG21690AATGTTGTCAATGAAGCTCATCATCGTCTCTAAACCCTTTTCGTC
MDC006112.449:1053-1067
TTGTTAGGACTATAGATTTGGATTGAACTC1053AATGTTGTCAATGAATATAAATAGGAGTAATTAGGTTTTCATCCT
MDC013338.153:2014-2028
GTAAAATAAAATTTTTTTTTTTTTTTTTTA2014AATGTTGTCAATGAAAGTAGAAAAACATAGAAAAGCAGAAGCAGA
MDC015301.257:2482-2496
GATACCATCTAATTATGCTGCTTCACAAAC2482AATGTTGTCAATGAACTTATGCTGGATTCGAGTGAWATAAACTAA
MDC016291.91:18709-18723
AATATATATATATATATTTTTTTTTTTTTA18709AATGTTGTCAATGAAAGTAGAAAAACATAGAAAAGTAAAAATAGG
MDC018137.204:169-183
TTGTTAGGACTATAGATAWGGATTGAACTC169AATGTTGTCAATGAATATAAATAGGAGTAATTAGGTTTTCATCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/Mdomestica_v1.0/TTCATTGACAACATT
lang : ja | db : Mdomestica_v1.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.080 | 0.073 | search_plus_done; http://172.18.8.74:28303/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.006 | search_minus_done; http://172.18.8.74:28303/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.089 | 0.003 | cgi_end;

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