GGGenome | Results

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2025-04-08 23:20:40, GGGenome : Manihot esculenta genome, v6.1

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Chromosome10:23532639-23532653

CAATGTTTCTCTTTCTGTTCGAGAAGATTA23532639TTCATTGACAACATTCCATAAGTAGAAAGAAAATGTCAAACTCTT

Chromosome12:27849680-27849694

ATAGAAAATTGTTGTATGTATGTTGTGTGA27849680AATGTTGTCAATGAATAAGGAAGCAAAGAAATTAAATAAAGTAAA

Chromosome16:5868373-5868387

TTCTATATTTAGTAGGTTTTTCACTTTAAT5868373AATGTTGTCAATGAACAATTTCTTTTTGTGTTTTTTTTTTTTTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.079 | 0.070 | search_plus_done; http://172.18.8.74:28304/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.082 | 0.003 | search_minus_done; http://172.18.8.74:28304/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=49
0.083 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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