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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-12-28 18:23:05, GGGenome : Prairie vole genome, MicOch1.0 (Nov, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chromosome:MicOch1.0:CM001677.1:1:85103860:1 chromosome CM001677.1
position: 51841308-51841322
CGGTGCTGCACTTCCTCCAGTCACCTGCAA51841308TTCATTGACAACATTTATTACATGGCAGCTTCGTCGTAATCACTG
chromosome:MicOch1.0:CM001679.1:1:86001432:1 chromosome CM001679.1
position: 21287996-21288010
AGATCTTTTGTTTGGGAGAATTTTGGTATC21287996TTCATTGACAACATTGTGTTAAAATATCTCATTTATTTAGACTGA
scaffold:MicOch1.0:JH996432.1:1:25865132:1 scaffold JH996432.1
position: 13404707-13404721
TCTGGGGGATGTTTGGGTTTCAAACTAGAT13404707TTCATTGACAACATTTAGTATTTAAAGTTTAAAATCCAAAATGTT
chromosome:MicOch1.0:CM001691.1:1:54861783:1 chromosome CM001691.1
position: 4369031-4369045
CCTCATTTCTCACAACTTTGCTACCCTTTC4369031TTCATTGACAACATTACAGCAAATGTTAATTCTTCATGACTCATG
chromosome:MicOch1.0:CM001689.1:1:61813736:1 chromosome CM001689.1
position: 41796001-41796015
TCTGTGGAAGCCAGAGGTCAGTTATGTGTC41796001TTCATTGACAACATTCCTTCTTGATTTGAGACAGGGTTTTTCATT
chromosome:MicOch1.0:CM001676.1:1:88288230:1 chromosome CM001676.1
position: 29180642-29180656
CACATGATATTCCCCTGTCTTTACTCCCAC29180642TTCATTGACAACATTGCCTGTTCCATTCACTTGATGTTTAAGTAA
chromosome:MicOch1.0:CM001677.1:1:85103860:1 chromosome CM001677.1
position: 13810995-13811009
GTCAATAAAATGCTTCATTTTTTCAATAAT13810995AATGTTGTCAATGAAGTCATTAAAATCTTTTTTTTTAATTTGGTA
scaffold:MicOch1.0:JH996429.1:1:16156543:1 scaffold JH996429.1
position: 14966856-14966870
TTTCCTGTAATAATCCATGGCTGGGAGTAT14966856AATGTTGTCAATGAATTCTGTGAGCACTTCTAGCAAAGAGCCAAA
scaffold:MicOch1.0:JH996436.1:1:14253900:1 scaffold JH996436.1
position: 3081583-3081597
AAAAAAAAATAAAACATTTTGAATTAAGTC3081583AATGTTGTCAATGAAAGACTTGGGCAAGAGAAAAGGCCTGATATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/MicOch1.0/TTCATTGACAACATT
lang : en | db : MicOch1.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.76:28127/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.007 | search_minus_done; http://172.18.8.76:28127/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.089 | 0.002 | cgi_end;

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