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2025-04-12 20:10:07, GGGenome : Megaselia scalaris genome, Msca1 (Feb, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

C192312 dna:scaffold scaffold:Msca1:C192312:1:372:1
position: 240-254

GTCGATATTCCACTGGGCAAAAAAATATAC240TTCATTGACAACATTAAATGGATGGAAATAAATTTCCAAATTTCC

scaffold28928 dna:scaffold scaffold:Msca1:scaffold28928:1:17728:1
position: 10691-10705

CGTGATCAAGAAGGACAAGATGTATTGCTT10691TTCATTGACAACATTTTCCGTTTCACCCAAGCTGGTTCTGAAGTA

C667006 dna:scaffold scaffold:Msca1:C667006:1:1135:1
position: 161-175

AAAAACATGAAAAACTAATTTGCCCGCGAA161AATGTTGTCAATGAAACACACTATAACGTTACTTCGCTTAAATAC

C714828 dna:scaffold scaffold:Msca1:C714828:1:1973:1
position: 1431-1445

ATTGAAGCTCAAAATCGATGCACCTGGATA1431AATGTTGTCAATGAAATGGAATCTGCCAGAAGGTTCGTCGCTAAT

C744174 dna:scaffold scaffold:Msca1:C744174:1:4405:1
position: 501-515

ATGGGTATCACCAGAAGGAGCTCAGTTTGA501AATGTTGTCAATGAAAGGGTTTTTCAATTACTACATCTTGTTGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.76:28150/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.006 | search_minus_done; http://172.18.8.76:28150/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=48
0.088 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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