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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 06:12:30, GGGenome : Oryza longistaminata genome, v0117-2013Aug (Aug, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OlongScf3491 dna:scaffold scaffold:v0117-2013Aug:OlongScf3491:1:63857:1
position: 29402-29416
TAATCCCAATAGTTGTTTATTTTTGGACTC29402TTCATTGACAACATTGCCACTTTGATGACTGTTCTGACATGAATG
OlongScf3994 dna:scaffold scaffold:v0117-2013Aug:OlongScf3994:1:70773:1
position: 11710-11724
CTTTCAAATGATGGTCAAACTAATTATAAA11710TTCATTGACAACATTAACTAAACGAGTGAAGAGTGAAGAGAAGAT
OlongScf1617 dna:scaffold scaffold:v0117-2013Aug:OlongScf1617:1:153891:1
position: 91150-91164
TCCTGATGTCCGACGTGTGGGTAAGACCTG91150TTCATTGACAACATTCTCTTGTGTTTGTACCGATTCATGGCTTGC
OlongScf2216 dna:scaffold scaffold:v0117-2013Aug:OlongScf2216:1:178245:1
position: 138507-138521
AGATCTATCTAATTTAGGTGTAGTGTTCTC138507TTCATTGACAACATTTTTCACTTCCTGCGTTAGGTTTCCATTATC
OlongScf1808 dna:scaffold scaffold:v0117-2013Aug:OlongScf1808:1:42182:1
position: 15986-16000
CCTCCATAAGCAATGCCTCTTTTCCCTATC15986AATGTTGTCAATGAATGTTTTAGGCAGCTGCAAAGTGCACATGTA
OlongScf1692 dna:scaffold scaffold:v0117-2013Aug:OlongScf1692:1:46703:1
position: 13109-13123
CAGAAAGATGTTGCCAAGGTCCTTCAACAA13109AATGTTGTCAATGAACAGCCGATTGGTGCATCCAGGAGGCACAGG
OlongScf12360 dna:scaffold scaffold:v0117-2013Aug:OlongScf12360:1:56690:1
position: 15338-15352
TCTTGCATAATTTACCTGAGTGAAACGGAA15338AATGTTGTCAATGAACAAAAGCACATCTTGTCCTTCGGCATCACG
OlongScf2436 dna:scaffold scaffold:v0117-2013Aug:OlongScf2436:1:79615:1
position: 63430-63444
TATGATTGAGCACCCCTACCTACTTTGCAA63430AATGTTGTCAATGAACTGTTTGTTCGCTACATAAATGTTCAATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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