GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 04:32:37, GGGenome : Oryza longistaminata genome, v0117-2013Aug (Aug, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OlongScf3491 dna:scaffold scaffold:v0117-2013Aug:OlongScf3491:1:63857:1
position: 29402-29416
TAATCCCAATAGTTGTTTATTTTTGGACTC29402TTCATTGACAACATTGCCACTTTGATGACTGTTCTGACATGAATG
OlongScf3994 dna:scaffold scaffold:v0117-2013Aug:OlongScf3994:1:70773:1
position: 11710-11724
CTTTCAAATGATGGTCAAACTAATTATAAA11710TTCATTGACAACATTAACTAAACGAGTGAAGAGTGAAGAGAAGAT
OlongScf1617 dna:scaffold scaffold:v0117-2013Aug:OlongScf1617:1:153891:1
position: 91150-91164
TCCTGATGTCCGACGTGTGGGTAAGACCTG91150TTCATTGACAACATTCTCTTGTGTTTGTACCGATTCATGGCTTGC
OlongScf2216 dna:scaffold scaffold:v0117-2013Aug:OlongScf2216:1:178245:1
position: 138507-138521
AGATCTATCTAATTTAGGTGTAGTGTTCTC138507TTCATTGACAACATTTTTCACTTCCTGCGTTAGGTTTCCATTATC
OlongScf1808 dna:scaffold scaffold:v0117-2013Aug:OlongScf1808:1:42182:1
position: 15986-16000
CCTCCATAAGCAATGCCTCTTTTCCCTATC15986AATGTTGTCAATGAATGTTTTAGGCAGCTGCAAAGTGCACATGTA
OlongScf1692 dna:scaffold scaffold:v0117-2013Aug:OlongScf1692:1:46703:1
position: 13109-13123
CAGAAAGATGTTGCCAAGGTCCTTCAACAA13109AATGTTGTCAATGAACAGCCGATTGGTGCATCCAGGAGGCACAGG
OlongScf12360 dna:scaffold scaffold:v0117-2013Aug:OlongScf12360:1:56690:1
position: 15338-15352
TCTTGCATAATTTACCTGAGTGAAACGGAA15338AATGTTGTCAATGAACAAAAGCACATCTTGTCCTTCGGCATCACG
OlongScf2436 dna:scaffold scaffold:v0117-2013Aug:OlongScf2436:1:79615:1
position: 63430-63444
TATGATTGAGCACCCCTACCTACTTTGCAA63430AATGTTGTCAATGAACTGTTTGTTCGCTACATAAATGTTCAATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/Orylo_v0117/TTCATTGACAACATT
lang : en | db : Orylo_v0117 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.75:28185/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.007 | search_minus_done; http://172.18.8.75:28185/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.090 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).