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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2023-02-08 09:02:24, GGGenome : Raphanus sativus genome, RSA_r1.0 (May, 2014)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Rsa1.0_00722.1
position: 40986-41000
CGTGACGCTGAAGGCCAGGATGTGTTGCTT40986TTCATTGACAACATTTTCCGTTTCACTCAGGTGAACTACTATACT
Rsa1.0_14398.1
position: 2790-2804
TTCAGAGGAGGCTCAATCTGGGTGGCGTGG2790TTCATTGACAACATTCTTTCAGGAAATCTGAGCAATCTCTGGACC
Rsa1.0_00722.1
position: 37392-37406
AGTATAGTAGTTCACCTGAGTGAAACGGAA37392AATGTTGTCAATGAAAAGCAACACATCTTGGCCTTCGGCATCACG
Rsa1.0_04468.1
position: 8947-8961
GCCGATGAACCTCCGATTCCTCTTCCGGTG8947AATGTTGTCAATGAAGTGGCGGCTGGAAATCGTTTCATTCTCATC
Rsa1.0_05732.1
position: 9140-9154
ATAGTATATAAAAACGAATTAAAAAAAATT9140AATGTTGTCAATGAAACACTAAACCCTAAACTCTAATCCTAAACC
Rsa1.0_07059.1
position: 4663-4677
AAGAACATGGCTCACCTGAGTGAAACGGAA4663AATGTTGTCAATGAACAGCAACACATCTTGACCTTCGGCATCACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/RSA_r1.0/TTCATTGACAACATT
lang : ja | db : RSA_r1.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.77:28239/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.084 | 0.005 | search_minus_done; http://172.18.8.77:28239/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=48
0.087 | 0.003 | cgi_end;

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