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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-12-27 09:32:47, GGGenome : S. purpuratus genome, Spur_v3.1 (Jun, 2011)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Scaffold44
position: 134057-134071
ACTGATACACTGCTTGCTTCCCACTCTGAA134057TTCATTGACAACATTGGTGTCCAATGTACTACCACTAGTCTTGTA
Scaffold158
position: 179393-179407
AGTTTTATATTGACATAGTGTCCATTACGC179393TTCATTGACAACATTGACTTGACTACGGCATCCTTAACACACATG
Scaffold284
position: 32153-32167
CTTCCAAGGCCCTGCTGTGCATGTTCACTG32153TTCATTGACAACATTTGTGTAAAATTTGAACGAGCAGACAACCCG
Scaffold284
position: 32622-32636
CTTCCAAGGCCCTGCTGTGCATGTTCACTG32622TTCATTGACAACATTTGTGTAAAATTTGAACGAGCAGACAACCCG
Scaffold522
position: 28007-28021
CATATCAAGGTTATTATTAAAAAGCCTCTT28007TTCATTGACAACATTTGAAAAGAAAAGAAAAATCCAAAAACCTCT
Scaffold876
position: 355967-355981
AGGTAAGATTACTTCACTTCATTTCATGTT355967TTCATTGACAACATTTTTTTCATCGATGACAAACGCAGTAGGTCT
Scaffold1109
position: 138503-138517
TAATACATTCTTGGCTCACAGATGTCCCTT138503TTCATTGACAACATTGTTGTTAATGTTCCGATAGGAAGCTATGTT
Scaffold1539
position: 123329-123343
TTTGTAATTGTTCATATCTTATATCTCACT123329TTCATTGACAACATTCTATAAAACCTCAATGTTCAAACACAATAA
Scaffold2357
position: 85989-86003
AGTTTTATTTTGACATAGTGTCCATTACGC85989TTCATTGACAACATTGACACGACTACAGCATCCTTAACCCTATTT
Scaffold2357
position: 96586-96600
AGTTTTATTTTGACATAGTGTTCATTACGC96586TTCATTGACAACATTGACATGACTACAGCATCCTTAACACACGTG
Scaffold108
position: 15013-15027
AAAGGATGCATCTTTTATCACACTTTCTAT15013AATGTTGTCAATGAAAGCACAATCCTGCTCGGTTCAGGCAAAAAT
Scaffold130
position: 59289-59303
TCAATAGTGAGAAACTGTCGAAAACTCTAA59289AATGTTGTCAATGAAGATAATAGAAATATGAATGCATGTTGTGGA
Scaffold210
position: 414468-414482
TGTATTCCCAATGTTTAAGGTCGTAGAGTC414468AATGTTGTCAATGAAAATCACAAGTCAAAACTCAACCATACCTCG
Scaffold905
position: 79127-79141
ATATCGTCAATTTTTCGTGTCCTGGACTTG79127AATGTTGTCAATGAAAAATTCCCTATAAACAGGTTTCCCATTTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/Spur_v3.1/TTCATTGACAACATT
lang : ja | db : Spur_v3.1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.77:28232/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.094 | 0.011 | search_minus_done; http://172.18.8.77:28232/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=40
0.096 | 0.003 | cgi_end;

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