GGGenome | Results

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2025-04-08 19:25:44, GGGenome : Citrullus lanatus subsp. vulgaris (97103) genome, v1

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Chr3
position: 15482535-15482549

GCAGCATTCCACGACACATTCGTAATAGTC15482535TTCATTGACAACATTTTGGTGTATTCTCGAACCGAGGCTGAGCAC

Chr4
position: 15134174-15134188

AAGCACGAGGACAAAATAAGAAGGAACAAC15134174TTCATTGACAACATTCTTCTGTTTGGTAAGGTTTAACAAACAAGT

Chr6
position: 1630372-1630386

TGAATTACTTCAAACATGACTTAACTTAGT1630372TTCATTGACAACATTAAAATTAACGTACTGCAACAGGGGTGCCAA

Chr6
position: 7268551-7268565

TGAAGAAGATTGTGAGCTGTTGTCTTGAGT7268551TTCATTGACAACATTGAAGACTGTACCACGGAAAGATTGAAAAGA

Chr5
position: 17546968-17546982

AAAAAGTGTTCTTAAAAGGTAACTAAGTCA17546968AATGTTGTCAATGAAAACCATGTAGAAGGTTACTGAAAAGTGTCC

Chr5
position: 29851701-29851715

CACAAGCTTGCTTACCTGGGTAAAACGGAA29851701AATGTTGTCAATGAAGAGAAGCACATCTTGCCCTTCAGCATCACG

Chr0
position: 443548-443562

TCTTTTCAATCTTTCCGTGGTACAGTCTTC443548AATGTTGTCAATGAAACTCAAGACAACAGCTCACAATCTTCTTCA

Chr0
position: 5665596-5665610

CCAAAAATGTTCTAAAAGGTAGCTAAGTCA5665596AATGTTGTCAATGAAAACCATGTAAAAGGCTCATAAAAAGTATCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.72:28215/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.006 | search_minus_done; http://172.18.8.72:28215/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.091 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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