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データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-24 16:15:03, GGGenome : Xenopus laevis genome, XenBase/JGI 9.1

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

chr3L:
3929393-3929407
AGAATCCAGGTTTCATAGCAATTTAACGCT3929393TTCATTGACAACATTCTTTGCTAATCACGTGTAAATTTAATTACA
chr3S:
32678469-32678483
ATTCTCTTTTTCAAAATCTTCAAAGAGAGA32678469TTCATTGACAACATTTATAAGCCACATATAATACTCTTGGTGAGA
chr3S:
40514747-40514761
CATTTAGCAGTCGATGTTTACTACAATCAG40514747TTCATTGACAACATTTCTATTTTTTATAAAGAAACCCCCCCCCAA
chr3S:
77149153-77149167
ACTATATTAGACAAACAAAATGCTACAGTT77149153TTCATTGACAACATTGCATATGTCCTCTGAGGCTTTAGTGTACTG
chr6L:
12865956-12865970
CACCAGCCCCATCACAGGATAACGAACTTC12865956TTCATTGACAACATTCTACGGCCGGAGTTCGGGAGGAGGAAAGAA
chr8L:
20166070-20166084
AGAGCAGAAGGTCTTGGTGGGAAAGCCAAG20166070TTCATTGACAACATTAGGTAAATCATGTTGGGGTAAACTGGAAAC
chr9_10L:
110997352-110997366
GGTTGTAAACGAATTATTGTTTGAAGCAAA110997352TTCATTGACAACATTTTTCTCATGGGACACAGATTCAGAAACACT
chr9_10S:
33719487-33719501
TCAATATGAAATTATAGAAAACAATTAGTC33719487TTCATTGACAACATTGACAACATTGACTTGTCATTCTGTTGCCTA
chr9_10S:
40586527-40586541
CACTTATTGTCTGTTACACATCGGATATGC40586527TTCATTGACAACATTTGGAAATATAAGGCTTGTAATTCATTTTGT
chr2L:
139952531-139952545
CACCTCTGATCCAGCCTGGGTAAACCTGAA139952531AATGTTGTCAATGAAAAGCAACACATCTTGTCCCTCTTGATCTCT
chr2S:
121444512-121444526
CACCTCTGAACCAGCCTGGGTGAACCTGAA121444512AATGTTGTCAATGAAAAGCAACACATCTTGTCCCTCTTGATCTCT
chr3L:
91866746-91866760
TACCCCAAATAGCTATAAACAAGCTTTGTC91866746AATGTTGTCAATGAAAAGCATTTAGCATAACCTACTGACGTGCTC
chr3S:
62731827-62731841
AATTGGGCAGCAAACTGGAAAATGAGGTTC62731827AATGTTGTCAATGAATGCAAGGCAATGCACTTTTGTAGAAATAAT
chr5L:
110622542-110622556
GTAAGTACCTGCATTCAACTCCTTCACACT110622542AATGTTGTCAATGAAAGAACTAGTGTAAACGAACAGGATGTTCTA
chr6S:
43465863-43465877
AGAAATCATCCTGCCAAATATTTTAAAGAC43465863AATGTTGTCAATGAAAAGCCCAAGCTGCGGTGCGGGAAAGCGACC
chr6S:
99975036-99975050
CTTTCATGGTAAAAGTATGGAGCAATATTC99975036AATGTTGTCAATGAAAGGTCAGGCCATTTGCATTCATTAGCAGCC
chr9_10L:
24826124-24826138
AATAAGGATATGCGAATGGAAATGGTGCAA24826124AATGTTGTCAATGAACTCTTTAACCTATTGTTCAAAAAATAGGCA
chr9_10L:
108237892-108237906
ATGTACACACAAAGGCAACAAAGGCAATTG108237892AATGTTGTCAATGAAAGCAAAAGCGGTCTTAGCTGCCCGCAGGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/Xenla9/TTCATTGACAACATT
lang : ja | db : Xenla9 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.090 | 0.080 | search_plus_done; http://172.18.8.77:28228/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.099 | 0.010 | search_minus_done; http://172.18.8.77:28228/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=41
0.105 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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