GGGenome | Results

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2025-04-09 03:07:52, GGGenome : Xenopus laevis genome, XenBase/JGI 9.1

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr3L:
3929393-3929407

AGAATCCAGGTTTCATAGCAATTTAACGCT3929393TTCATTGACAACATTCTTTGCTAATCACGTGTAAATTTAATTACA

chr3S:
32678469-32678483

ATTCTCTTTTTCAAAATCTTCAAAGAGAGA32678469TTCATTGACAACATTTATAAGCCACATATAATACTCTTGGTGAGA

chr3S:
40514747-40514761

CATTTAGCAGTCGATGTTTACTACAATCAG40514747TTCATTGACAACATTTCTATTTTTTATAAAGAAACCCCCCCCCAA

chr3S:
77149153-77149167

ACTATATTAGACAAACAAAATGCTACAGTT77149153TTCATTGACAACATTGCATATGTCCTCTGAGGCTTTAGTGTACTG

chr6L:
12865956-12865970

CACCAGCCCCATCACAGGATAACGAACTTC12865956TTCATTGACAACATTCTACGGCCGGAGTTCGGGAGGAGGAAAGAA

chr8L:
20166070-20166084

AGAGCAGAAGGTCTTGGTGGGAAAGCCAAG20166070TTCATTGACAACATTAGGTAAATCATGTTGGGGTAAACTGGAAAC

chr9_10L:
110997352-110997366

GGTTGTAAACGAATTATTGTTTGAAGCAAA110997352TTCATTGACAACATTTTTCTCATGGGACACAGATTCAGAAACACT

chr9_10S:
33719487-33719501

TCAATATGAAATTATAGAAAACAATTAGTC33719487TTCATTGACAACATTGACAACATTGACTTGTCATTCTGTTGCCTA

chr9_10S:
40586527-40586541

CACTTATTGTCTGTTACACATCGGATATGC40586527TTCATTGACAACATTTGGAAATATAAGGCTTGTAATTCATTTTGT

chr2L:
139952531-139952545

CACCTCTGATCCAGCCTGGGTAAACCTGAA139952531AATGTTGTCAATGAAAAGCAACACATCTTGTCCCTCTTGATCTCT

chr2S:
121444512-121444526

CACCTCTGAACCAGCCTGGGTGAACCTGAA121444512AATGTTGTCAATGAAAAGCAACACATCTTGTCCCTCTTGATCTCT

chr3L:
91866746-91866760

TACCCCAAATAGCTATAAACAAGCTTTGTC91866746AATGTTGTCAATGAAAAGCATTTAGCATAACCTACTGACGTGCTC

chr3S:
62731827-62731841

AATTGGGCAGCAAACTGGAAAATGAGGTTC62731827AATGTTGTCAATGAATGCAAGGCAATGCACTTTTGTAGAAATAAT

chr5L:
110622542-110622556

GTAAGTACCTGCATTCAACTCCTTCACACT110622542AATGTTGTCAATGAAAGAACTAGTGTAAACGAACAGGATGTTCTA

chr6S:
43465863-43465877

AGAAATCATCCTGCCAAATATTTTAAAGAC43465863AATGTTGTCAATGAAAAGCCCAAGCTGCGGTGCGGGAAAGCGACC

chr6S:
99975036-99975050

CTTTCATGGTAAAAGTATGGAGCAATATTC99975036AATGTTGTCAATGAAAGGTCAGGCCATTTGCATTCATTAGCAGCC

chr9_10L:
24826124-24826138

AATAAGGATATGCGAATGGAAATGGTGCAA24826124AATGTTGTCAATGAACTCTTTAACCTATTGTTCAAAAAATAGGCA

chr9_10L:
108237892-108237906

ATGTACACACAAAGGCAACAAAGGCAATTG108237892AATGTTGTCAATGAAAGCAAAAGCGGTCTTAGCTGCCCGCAGGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.77:28228/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.092 | 0.010 | search_minus_done; http://172.18.8.77:28228/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=41
0.098 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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