GGGenome | Results

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2025-04-18 04:38:28, GGGenome : Xenopus tropicalis genome, XenBase/JGI 7.1

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

scaffold_4:
66453287-66453301

CCAATAGCTTTGGGAATGAGCAGTGTAAGC66453287AATGTTGTCAATGAAACAAAATTATACAGGCCAATAACTTATTAT

scaffold_1:
179364307-179364321

ATAGGGTTCAGTTATGACTGCAACTGTGCG179364307TTCATTGACAACATTTATCCAGGTTTCTTCTGTGCAAATCGCTCC

scaffold_2:
108736489-108736503

AGGGAGTGGTGTGTGGAACTGGTATTCCAG108736489TTCATTGACAACATTACCTTGAAATAAATGGGGTTTGGAGGCAGA

scaffold_7:
76181911-76181925

ACGGGCATCTGAAAATGTGAAAATACCACA76181911TTCATTGACAACATTGTATTGAGAAGTTTATAAAATAATGTGAAG

scaffold_45:
419397-419411

CACTCTCACAATATTCAATATTTTGGTTGC419397TTCATTGACAACATTATTCTTATATGGTCCGGTACCGATGAACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.77:28225/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.004 | search_minus_done; http://172.18.8.77:28225/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=49
0.087 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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