GGGenome | Results

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2025-04-09 16:41:50, GGGenome : Xenopus tropicalis genome, XenBase/JGI 9.0

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Chr02:
154760750-154760764

AGGGAGTGGTGTGTGGAACTGGTATTCCAG154760750TTCATTGACAACATTACCTTGAAATAAATGGGGTTTGGAGGCAGA

Chr07:
82563692-82563706

ACGGGCATCTGAAAATGTGAAAATACCACA82563692TTCATTGACAACATTGTATTGAGAAGTTTATAAAATAATGTGAAG

scaffold_61:
415813-415827

CACTCTCACAATATTCAATATTTTGGTTGC415813TTCATTGACAACATTATTCTTATATGGTCCGGTACCGATGAACAA

Chr01:
35421815-35421829

GGAGCGATTTGCACAGAAGAAACCTGGATA35421815AATGTTGTCAATGAACGCACAGTTGCAGTCATAACTGAACCCTAT

Chr04:
93421564-93421578

CCAATAGCTTTGGGAATGAGCAGTGTAAGC93421564AATGTTGTCAATGAAACAAAATTATACAGGCCAATAACTTATTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.77:28227/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.006 | search_minus_done; http://172.18.8.77:28227/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.087 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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