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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-03-29 03:27:47, GGGenome : Platyfish genome, Xipmac4.4.2 (Jan, 2012)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

JH556663.1 dna:scaffold scaffold:Xipmac4.4.2:JH556663.1:1:7384412:1 REF
position: 6072838-6072852
AGCTACTAAATAATGGGGTGTCCTTAGTTT6072838TTCATTGACAACATTTCCCTTTTTGTGGTACCCGTATTAAATGTG
JH557242.1 dna:scaffold scaffold:Xipmac4.4.2:JH557242.1:1:177806:1 REF
position: 162817-162831
GGCCCACAGAACCACAGAACAACAAACTTC162817TTCATTGACAACATTTTACGGCCGGATTTCGGATGCAAGAGGGAA
JH556673.1 dna:scaffold scaffold:Xipmac4.4.2:JH556673.1:1:4361753:1 REF
position: 444697-444711
TTAAAGTCATTAGTGACTTCAGGTTAACAC444697AATGTTGTCAATGAATAACAACAATAAGGGAAATTATGGTACAGT
JH556677.1 dna:scaffold scaffold:Xipmac4.4.2:JH556677.1:1:3631609:1 REF
position: 1320846-1320860
GTATGTTTGTTAGATTTAAAATGGCTTCAG1320846AATGTTGTCAATGAAAGCAAGTCAAAAATAATTTATCATTTTAGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/Xipmac4.4.2/TTCATTGACAACATT
lang : ja | db : Xipmac4.4.2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.130 | 0.121 | search_plus_done; http://172.18.8.76:28126/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.135 | 0.005 | search_minus_done; http://172.18.8.76:28126/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=48
0.136 | 0.001 | cgi_end;

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