GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 10:06:20, GGGenome : Vigna angularis genome, ver3 (Nov, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

5
position: 1967080-1967094
TACACTCTTTTGCTACATAACCACACAATT1967080AATGTTGTCAATGAAAAATTGACGGAATAGATTTAATTGATACAC
scaffold_273
position: 287501-287515
TGATGCAATTCTCACTTCTTCACTGTAGAG287501AATGTTGTCAATGAATATGGACTGATTGAACATCTGGAATTTGGT
scaffold_543
position: 59473-59487
TCCTCAAGTTGGAAGTTCTTACGCGTATTT59473TTCATTGACAACATTATTTACTAGAGGTCCTTCACCATTTAGTGT
6
position: 1865416-1865430
TATATTTAGGTTTGCAGAATTATAGATGAA1865416TTCATTGACAACATTTGCAATGTTGGTGACCACTTGCTTACTTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/adzuki_ver3/AATGTTGTCAATGAA
lang : en | db : adzuki_ver3 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.079 | 0.071 | search_plus_done; http://172.18.8.77:28238/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.005 | search_minus_done; http://172.18.8.77:28238/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.086 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).