GGGenome | Results

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2025-04-16 01:04:12, GGGenome : Lizard genome, Broad AnoCar2.0/anoCar2 (May, 2010)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr1:69892575-69892589

CCATGAAAACCTTCCACAACACATTTACCC69892575AATGTTGTCAATGAAGATTTATAGATCTCCAGGAATTAAGGCAGG

chr1:72247048-72247062

TAAATGGATACAGGATTTTAGATCCAATGC72247048AATGTTGTCAATGAATGCATTTCTGATTGTTAGCTCTGAACTTCT

chr5:102888040-102888054

CATACTGAACATTTTAAACAAGAAGATAGA102888040AATGTTGTCAATGAATAAAAACACTCCTCAAAAATTTTGATGAAT

chrUn_GL343236:1522796-1522810

TAAGGTACATTCTTTGTAATTCATCCTGAA1522796AATGTTGTCAATGAAGGAAGACTTGCTGATGAAAGAAGAGTGATC

chrUn_GL343272:1296334-1296348

GTCAGAAAAGTCTGACAACAGAATAAATCC1296334AATGTTGTCAATGAAACTACGAAGCAGTCTGGTGTTGTGGTTTGA

chr1:149949293-149949307

TCTTTGCTTTGCAATGTACACAAACTTTAT149949293TTCATTGACAACATTATTTAAAATATTGTGCATAAAATTACCTTC

chr1:262700235-262700249

AGTTCAAGATTGCAGAAAGGAAGTTGTGCA262700235TTCATTGACAACATTCACATTGTACTTTATGCATATCAGTGTGAA

chr2:20688667-20688681

AACCTAAGTGTACTTTGACATTGAGATGCT20688667TTCATTGACAACATTTAAGCATTCCTGTCCTAGATCAAGCAAGAA

chr3:166036616-166036630

GTGCATATGTGAATACTCTCACACAAAGAT166036616TTCATTGACAACATTCATATTCTGGAGCCCCCAGTGGTGCAGTGA

chr5:13337424-13337438

TACAACATTGACTGGATCTTCTACCTTTAA13337424TTCATTGACAACATTTTTACTTAAAACTTTATTATAGCTCAAAGT

chrUn_GL343288:1585456-1585470

GTCTTGCTATCACTGCTTACACTGGCACAG1585456TTCATTGACAACATTTCATCCAATGTTTCCAGCCGATGAAGAGAA

chrUn_GL343303:298467-298481

AAGAGGAAGAATTTGGGGTCTAAGTTAATT298467TTCATTGACAACATTTTTTGTGTTCTTTGTTGTATTTCTTTCCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.072 | search_plus_done; http://172.18.8.76:28077/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.76:28077/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.088 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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